Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d21r
(795 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 36 0.029
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.066
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 32 0.47
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 31 0.81
SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12) 30 2.5
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 30 2.5
SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 29 4.3
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_9507| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.7
SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047) 28 7.6
SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66) 28 7.6
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 36.3 bits (80), Expect = 0.029
Identities = 28/101 (27%), Positives = 47/101 (46%)
Frame = -3
Query: 595 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP 416
V+AP+E+A+ AP +E VE T EE+E E + S E +++ V + P
Sbjct: 35 VEAPIEEAE---AP----EEEVEATVEEVEAPMEEAAASVEEAEVPIEKAETQPVDTEGP 87
Query: 415 IEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNPIVENSQ 293
+E E+A+ D E + + S + P+VE +
Sbjct: 88 VENAETSFEEAEAADEETEEPVKEAEGSFEEAEAPVVETEE 128
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 35.1 bits (77), Expect = 0.066
Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 3/166 (1%)
Frame = -3
Query: 778 KCRSSSEXADFPA-DSVSFVENLDAPVEDADVLADSVNFXXXXXXXXXXXXXXXXXXSFV 602
+ +S E A+ P ++ V+ +APVE+A+ A+ +
Sbjct: 1078 EAEASFEEAEAPVVETEEPVKEAEAPVEEAEAPAEETEEPVKEAEASVEITEAP-----I 1132
Query: 601 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVD 422
+ +AP E + V +E V+ EE+E E S E ++E +
Sbjct: 1133 EEAEAPDERVESSVEEAEAPEEEVKAPVEEVEAPVEEAVASVEEAEVPIEEAETQAEDTE 1192
Query: 421 LPIEAQPEDLEKAQLVDLPVENVAEP--EDLSPVQVVNPIVENSQS 290
P+E ++KA + PVE P ED +P + VE S
Sbjct: 1193 GPVEDAEASVQKA---EAPVEETEAPFEEDEAPAEKTEKPVEAGPS 1235
Score = 34.3 bits (75), Expect = 0.12
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = -3
Query: 595 VDAPVEDADLQVAPVNIVDEPVEKTN---EEIENDSEVGSISWVEYPAELDEDGNGLVIV 425
VDAPV++A+ AP + PVE++ E+ E E + E A ++E
Sbjct: 725 VDAPVKEAE---APAGEAEAPVEESEVLVEKAEASVEEAEVPVDEVEASVEEAEAPAHEA 781
Query: 424 DLPIEAQPEDLEKAQL----VDLPVENVAEPE 341
+ P+E +E+A++ ++PVE PE
Sbjct: 782 EAPVEEAKSSIEEAEVPVEEAEVPVEEAEVPE 813
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = -3
Query: 592 DAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLPI 413
+APVE++++ V E E +E+E E E A ++E + + ++P+
Sbjct: 740 EAPVEESEVLVEKAEASVEEAEVPVDEVEASVEEAEAPAHEAEAPVEEAKSSIEEAEVPV 799
Query: 412 EAQPEDLEKAQLVDLPVENVAEPEDL 335
E +E+A++ + E AE D+
Sbjct: 800 EEAEVPVEEAEVPEKGAEAPAEGSDV 825
Score = 33.5 bits (73), Expect = 0.20
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 8/160 (5%)
Frame = -3
Query: 778 KCRSSSEXADFPA-DSVSFVENLDAPVEDADVLADSVNFXXXXXXXXXXXXXXXXXXSFV 602
+ + +E + P ++ + VE +AP+E+A+ + V V
Sbjct: 1106 EAEAPAEETEEPVKEAEASVEITEAPIEEAEAPDERVESSVEEAEAPEEEVKAP-----V 1160
Query: 601 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSE--VGSISWVEYPAE-----LDEDG 443
+ V+APVE+A V + E E E+ E E S+ E P E +ED
Sbjct: 1161 EEVEAPVEEAVASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPVEETEAPFEEDE 1220
Query: 442 NGLVIVDLPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQ 323
+ P+EA P Q + PV+ P + + VQ
Sbjct: 1221 APAEKTEKPVEAGP----SVQEAEAPVKETERPVEEAEVQ 1256
Score = 29.5 bits (63), Expect = 3.3
Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Frame = -3
Query: 700 EDADVLADSVNFXXXXXXXXXXXXXXXXXXSFVDNVDAPVEDADLQVAPVNIVDEPVEKT 521
E+A+ L + + V+ ++AP+E A A VD PV++
Sbjct: 673 EEAETLVEETKVEEDKAPIQEAEASVKKAEATVEEIEAPIERAKEVEAQSKEVDAPVKEA 732
Query: 520 NE---EIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIEAQPEDLE-KAQLVDLPVENV 353
E E E + + A ++E V VD +EA E+ E A + PVE
Sbjct: 733 EAPAGEAEAPVEESEVLVEKAEASVEE---AEVPVD-EVEASVEEAEAPAHEAEAPVEEA 788
Query: 352 AEPEDLSPVQVVNPIVENSQSEYPGK 275
+ + V V V ++E P K
Sbjct: 789 KSSIEEAEVPVEEAEVPVEEAEVPEK 814
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 32.3 bits (70), Expect = 0.47
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Frame = -3
Query: 583 VEDADLQVAPVNIVDEPVEKTNEEIENDSE------VGSISWVEYPAELDEDGNGLVIVD 422
+E DL++ PVN D V + ++IE D++ + I V+Y ++ +G + D
Sbjct: 1024 MEPKDLEL-PVNEPDVEVYEPQQDIEIDADGLRAQILSPIMSVDYDSDASANGGHMRRED 1082
Query: 421 LPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVNP--IVENSQSEYPGKRY 269
E P D+ K P +AE E + V V P E + EY + Y
Sbjct: 1083 PQNEESPPDIAKDDKPLSPEAPIAEAESILLVAEVEPGAKFETCEPEYLKEDY 1135
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 31.5 bits (68), Expect = 0.81
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 586 EHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQ--PGHRRPQLEHRGFLRSLQSQPGNRHX 759
+H + Q+ H++ Q +H R + QNQ H++ Q +H R Q+Q +RH
Sbjct: 569 QHHHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHRHRKQQNQHHHRHG 628
Query: 760 H 762
H
Sbjct: 629 H 629
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 616 NQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHXH 762
NQ H++ Q +H R + QNQ HR Q + R Q Q N+H H
Sbjct: 568 NQHHHQKQQNQHHRHHQKQQNQ-HHRHHQKKQNQHYRHHQKQQ-NQHHH 614
>SB_40039| Best HMM Match : F5_F8_type_C (HMM E-Value=6.2e-12)
Length = 1093
Score = 29.9 bits (64), Expect = 2.5
Identities = 28/87 (32%), Positives = 39/87 (44%)
Frame = -3
Query: 595 VDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVDLP 416
VD P+ D P+ EPV+K +NDS+ SI+ P + G D P
Sbjct: 862 VDKPIAKKDSDDKPITAEGEPVDK--PIAKNDSDDKSITAEGEPDDKPITTKG-ESEDAP 918
Query: 415 IEAQPEDLEKAQLVDLPVENVAEPEDL 335
I A D EKA + ++V E +DL
Sbjct: 919 ITATLNDPEKA-IASGGEKSVIEKDDL 944
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 339 SSGSATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGY 470
SS S++ S+ S+S + S SS +S S+ +S SSS S GY
Sbjct: 589 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASLGY 632
>SB_47412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 559 RLVNRRPQLEHRRCLRS*QNQPG-H-RRPQLEHRRCLRSLQNQPGHRRPQLEHR 714
RL RRP+L HRR R +P H RRP+L RR + HRR HR
Sbjct: 163 RLHTRRPRL-HRRRTRLHTRRPRLHTRRPRLHRRRPRLHTRRPRRHRRRPRLHR 215
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +1
Query: 601 LRS*QNQPGHRRPQLEHRRCLRSLQNQPGHRRPQLEHRGFLRSLQSQPGNRHXH 762
+RS PG R + +R +Q GH R GF RS Q PG+ H
Sbjct: 158 IRSYPVTPGCTRSYQGSEKSVRGVQVISGHARSYPVTPGFTRSYQVIPGHTRSH 211
>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 98 RFRNSLKDTQTF-SKKV*KN*LLI*EMLFIKYRKIMNVNV 214
RFRNS+KDT+ F S V + L+ + I+ RK+ N V
Sbjct: 111 RFRNSVKDTRVFRSSDVGSDHYLVCATVKIRLRKVQNGRV 150
>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2735
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +2
Query: 257 CSVRVS-FAGVFTLTVLNDGVNYL 325
CS+RV+ + TLTV DGVNY+
Sbjct: 2036 CSIRVNRYRNAATLTVEKDGVNYI 2059
>SB_56345| Best HMM Match : Integrin_alpha (HMM E-Value=0.00047)
Length = 594
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 474 LNILLNWTKMETDLLLLIYLLR-HNPKI*RKPSLLTFPSKMSLNQKT 337
+ + L W K E DL L+YLL KP++L S++ N++T
Sbjct: 395 VTVSLPWKKSEEDLSYLLYLLSVQMSNNTDKPAVLESTSRVGANKRT 441
>SB_53385| Best HMM Match : DUF1388 (HMM E-Value=0.66)
Length = 264
Score = 28.3 bits (60), Expect = 7.6
Identities = 24/67 (35%), Positives = 29/67 (43%)
Frame = +1
Query: 514 PHSSFQLVHPRCSQGRLVNRRPQLEHRRCLRS*QNQPGHRRPQLEHRRCLRSLQNQPGHR 693
PH + P+ S L RPQ +HR +P RPQ HR L + Q H
Sbjct: 143 PHRPLEPTRPQESHRPLEPPRPQEQHRPLESHRPLEP--TRPQESHRP-LEPPRPQEPH- 198
Query: 694 RPQLEHR 714
RPQ HR
Sbjct: 199 RPQEPHR 205
>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = -3
Query: 601 DNVDAPVEDADLQVAPVNIVDEPVEKTNEEIENDSEVGSISWVEYPAELDEDGNGLVIVD 422
+ V+ E+ + + + + +E EK NEE EN+ E + E ED G
Sbjct: 48 EEVEEEEEEEEEKEDEIEVEEEEEEKENEEEENEDE------EDEEEEEGEDPKG----- 96
Query: 421 LPIEAQPEDLEKAQLVDLPVENVAEPEDLSPVQV 320
P+E+ E + KA + DL + PE++ V++
Sbjct: 97 PPLESYSEQMSKALIGDL---SAKFPENVKVVRI 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,491,460
Number of Sequences: 59808
Number of extensions: 400161
Number of successful extensions: 1118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -