Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d18f
(567 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 33 0.13
At5g52490.1 68418.m06512 fibrillarin, putative similar to fibril... 31 0.41
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re... 31 0.54
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 29 2.2
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 2.9
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.9
At1g66400.1 68414.m07541 calmodulin-related protein, putative si... 29 2.9
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related... 28 5.0
At1g30780.1 68414.m03763 F-box family protein 28 5.0
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 6.6
At3g56400.1 68416.m06272 WRKY family transcription factor DNA-bi... 27 6.6
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327 27 6.6
At5g37540.1 68418.m04521 aspartyl protease family protein weak s... 27 8.7
At4g28080.1 68417.m04027 expressed protein 27 8.7
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 27 8.7
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (... 27 8.7
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 33.1 bits (72), Expect = 0.13
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +3
Query: 129 LVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGP---AIVEGA 299
L T P+ V A V +P++ P P+S + +P+SVGP A V+
Sbjct: 242 LPQTQSPVKVDRATVAPSIPVTGQPPA-----PVSSANGPIQNRQPVSVGPVPTATVKVE 296
Query: 300 PVTVTGADGTPLVQIIINVNRPS 368
P TVT P I V RP+
Sbjct: 297 PSTVTSMAPVPSFPHIPAVARPA 319
Score = 30.3 bits (65), Expect = 0.94
Identities = 19/72 (26%), Positives = 28/72 (38%)
Frame = +3
Query: 246 LVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVNRPSEIAADPVDVEDIAEEPLPE 425
L T P+ V A V + + VTG P+ + ++ PV + EP
Sbjct: 242 LPQTQSPVKVDRATVAPS-IPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTV 300
Query: 426 VVILPTPVFPEI 461
+ P P FP I
Sbjct: 301 TSMAPVPSFPHI 312
Score = 27.1 bits (57), Expect = 8.7
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Frame = +3
Query: 108 PISVGPALVDTYEPISVGPALVDTYVPISVGPALVDTYEPISVGPALVDTYEPISVGPAI 287
P+ V A V P++ P P+S + +P+SVGP T + V P+
Sbjct: 248 PVKVDRATVAPSIPVTGQPP-----APVSSANGPIQNRQPVSVGPVPTAT---VKVEPST 299
Query: 288 VEG-APVTV---TGADGTPLVQII--INVNRPSEIAADPVDVEDIAEEPLPEVVILPTP 446
V APV A P Q I I + S ++ D V + A + P VV TP
Sbjct: 300 VTSMAPVPSFPHIPAVARPATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTP 358
>At5g52490.1 68418.m06512 fibrillarin, putative similar to
fibrillarin from {Xenopus laevis} SP|P22232, {Mus
musculus} SP|P35550, {Homo sapiens} SP|P22087
Length = 292
Score = 31.5 bits (68), Expect = 0.41
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = -2
Query: 314 GDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRSNRDGFVGV 135
G + RG+ G S R G KS SDG G+ G +K H GV ++S D V
Sbjct: 24 GSAVRGSGRGGESGRGRGPGRVKSESDG-GIKGGSKVLVTPHRHAGVFVAKSKADALVTK 82
Query: 134 N 132
N
Sbjct: 83 N 83
>At3g27550.1 68416.m03443 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 491
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -2
Query: 350 DDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRS 237
DDD DE +SA S + F N S+RDG + +KS+S
Sbjct: 445 DDDEDENRTVSASSSKQSRFRN-NSSRDG-INNSKSKS 480
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 29.1 bits (62), Expect = 2.2
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 183 VPISVGPALVDTYE-PISVGPALVDTYEPISVGPAIVEGAPVTVTGADGTPLVQIIINVN 359
VP+S G + P +GP + P GP+ E VTV G DG P +N
Sbjct: 140 VPVSEGGVISSPSSYPWPLGPREGSAFSP---GPSPSEITSVTVPGKDGVPF------IN 190
Query: 360 RPSEIAADPVDVEDIAEEPLP 422
+ DV+ + PLP
Sbjct: 191 SNPAVPLPTGDVDSTSINPLP 211
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 563 KSDSGSRDDRGTNNYGLDDFGEDRAGELHGFRNVDFRKYGSGENNNFGQR 414
+S G DR + + G FG R+G R+ F +GS ++ G R
Sbjct: 552 RSPEGYGSDRSSQSGGRSSFGGGRSGGSSNNRSSGFGDFGSDRSSQSGGR 601
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 28.7 bits (61), Expect = 2.9
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -2
Query: 347 DDLDEGSAIS-AGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVN 171
DD GS + DS G +N DG G N + ++ + N +N D + G N
Sbjct: 47 DDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNNN-----NNGNNNNDNNNGNN 101
Query: 170 KSRSNRDGFVGVNKSRSNGDG 108
K +N G N + +N +G
Sbjct: 102 KDNNNN----GNNNNGNNNNG 118
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = -2
Query: 338 DEGSAISAGDSHRGTFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNKSRS 159
D S S ++ NNG +N D N ++ D G NK +N + N +
Sbjct: 60 DSQSPPSPQGNNNNDGNNGNNNNDN-NNNNNGNNNNDNNNGNNKDNNNNGNNNNGNNNNG 118
Query: 158 NRDGFVGVNKSRSNGD 111
N + G N + +N D
Sbjct: 119 NDNN--GNNNNGNNND 132
>At1g66400.1 68414.m07541 calmodulin-related protein, putative
similar to calmodulin-related protein 2, touch-induced
from SP:P25070 [Arabidopsis thaliana]; contains Pfam
profile: PF00036 EF hand (4 copies)
Length = 157
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 DLDEGSAISAGDSHRGTFNNGR--SNRDGLVGVNKSRSDGDGLV 219
DLD ISA + H N G S +D +NK SDGDG V
Sbjct: 99 DLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCV 142
>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 244
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 398 LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 264
+N+N S + T ++ DL G + S GDS+ NN S+ DG
Sbjct: 142 MNMNNYSSHALSTDDINLDLTLGPSKSIGDSNNIINNNTNSSFDG 186
>At1g30780.1 68414.m03763 F-box family protein
Length = 482
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 384 PVDVEDIAEEPLPEVVILPTPVFPEID 464
P D+ +A PLP+V +LP P FP+ +
Sbjct: 75 PPDLPLLAP-PLPDVPLLPPPAFPDFE 100
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.5 bits (58), Expect = 6.6
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Frame = -2
Query: 440 GENNNFGQRLFGNV-LNINGISGNLGRTVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDG 264
G NN+ L G V +N+ G++G L RTV I G RG GR R
Sbjct: 169 GGNNSSEAPLSGRVNVNVTGLNGRLKRTV----------VIQQGGGGRGRVRGGRGGRGP 218
Query: 263 LVGVNK----SRSDGDGLVGVNKS-RSNRDGHVGVNKSRSNRDGFVGVNKSRSNGD 111
V++ G G+ G R+ G+ G + +G V KS ++ D
Sbjct: 219 APTVSRRLPIHNQQGGGMRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLD 274
>At3g56400.1 68416.m06272 WRKY family transcription factor
DNA-binding protein 4 WRKY4 - Nicotiana tabacum,
EMBL:AF193771
Length = 294
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 2 HS*NDNKQTSKNEICDHH 55
H+ N N +T K++ CDHH
Sbjct: 177 HTCNTNAETPKSKTCDHH 194
>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
Length = 859
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 389 NGISGNLGRTVHVDDDLDEGSAISAGDS 306
NG G LG+ H++D + ++++AG+S
Sbjct: 68 NGSKGKLGKAAHLEDWITTITSLTAGES 95
>At5g37540.1 68418.m04521 aspartyl protease family protein weak
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Prosite
PS00141: Eukaryotic and viral aspartyl proteases active
site; contains 1 predicted transmembrane domain
Length = 442
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = -2
Query: 296 TFNNGRSNRDGLVGVNKSRSDGDGLVGVNKSRSNRDGHVGVNK------SRSNRDG 147
TF+N ++ ++G K +D G++G+N R + ++K +RSNR G
Sbjct: 183 TFSNSQTTPPLILGCAKESTDEKGILGMNLGRLSFISQAKISKFSYCIPTRSNRPG 238
>At4g28080.1 68417.m04027 expressed protein
Length = 1660
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 362 TVHVDDDLDEGSAISAGDSHRGTFNNGRSNRDGLVGVN 249
TVH DDD DEG + + F++GR R L +N
Sbjct: 1078 TVHEDDDSDEGWQEAV---PKNRFSSGRRTRPSLAKLN 1112
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = -2
Query: 509 DFGEDRAGELHGFRNVDFRKYGSGENNNFG-QRLFGNVLNINGISGNLGRTVHVDDDLDE 333
DFGE + ++ + F ++ + ++ L G V+ N + + GR+ + D
Sbjct: 349 DFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDS 408
Query: 332 GSAISAGDSHRGTFNNGRSNRD 267
G+ + G S +NNG +N+D
Sbjct: 409 GNQWNGGYSRGQGYNNGYANQD 430
>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
(ALDH3) nearly identical to mitochondrial aldehyde
dehydrogenase ALDH3 [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
aldehyde dehydrogenase (NAD) family protein
Length = 534
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +3
Query: 198 GPALVDT-YEPISVGPALVDTYEPI-----SVGPAIVEGAPVTVTGADGTPLVQIII 350
GP V T +EPI V ++ P+ +GPA+ G V + A+ TPL +++
Sbjct: 181 GPHHVQTLHEPIGVAGQIIPWNFPLLMLSWKLGPALACGNTVVLKTAEQTPLSALLV 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,813
Number of Sequences: 28952
Number of extensions: 218218
Number of successful extensions: 752
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -