Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d17r
(497 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 280 1e-74
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 235 5e-61
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 199 3e-50
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 174 8e-43
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 170 2e-41
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 149 3e-35
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 133 2e-30
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 132 4e-30
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 125 6e-28
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 124 1e-27
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 124 1e-27
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 123 3e-27
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 122 6e-27
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 108 6e-23
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 105 7e-22
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 104 1e-21
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 91 1e-17
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 89 4e-17
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 61 2e-08
UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7; E... 35 0.88
UniRef50_Q6CWX5 Cluster: Similar to sp|Q9C2M3 Neurospora crassa ... 35 1.2
UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic D-r... 33 2.7
UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2; C... 33 2.7
UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisia... 33 3.6
UniRef50_Q8G0I1 Cluster: Putative uncharacterized protein; n=3; ... 33 4.7
UniRef50_A7PK49 Cluster: Chromosome chr15 scaffold_19, whole gen... 33 4.7
UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=... 32 6.2
UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3; Alphapr... 32 6.2
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 280 bits (686), Expect = 1e-74
Identities = 131/146 (89%), Positives = 139/146 (95%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
MGRM APGKG+SQSALPYRRSVPTWLKL DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 235 bits (574), Expect = 5e-61
Identities = 112/146 (76%), Positives = 124/146 (84%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
MGRM + GKGIS SALPY+RS P+WLK DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
RIHRLARYYK LPP WKYES+TA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTA 146
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 199 bits (485), Expect = 3e-50
Identities = 92/146 (63%), Positives = 115/146 (78%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
M RM G+G + SALPYRR+ P WLK+ +V + + K +KG+ PSQIG+ LRDS G+
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPAWLKIASRNVVKMVCKSSRKGMMPSQIGMELRDSMGI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
AQV+ VTG+KILRI+K GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+RLILVES
Sbjct: 61 AQVKNVTGRKILRILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYRLILVES 120
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
RIHRLARYYK LPP WKYESSTA
Sbjct: 121 RIHRLARYYKRVKQLPPTWKYESSTA 146
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 174 bits (424), Expect = 8e-43
Identities = 93/146 (63%), Positives = 103/146 (70%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
MG M AP K +SQS LPY SV WLK DD+KEQIYKL KKGLTPSQIGV LRD+HG
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSVLMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHG- 59
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
LA DLP DLY+LIKKAVA++KHLERNRKDKD+KF L L ES
Sbjct: 60 -------------------LALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTES 100
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
RIH LARY KTK +LPP+WKYES +A
Sbjct: 101 RIHPLARYCKTKRMLPPSWKYESPSA 126
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 170 bits (413), Expect = 2e-41
Identities = 76/141 (53%), Positives = 104/141 (73%)
Frame = -3
Query: 429 MXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQV 250
M KGI+ S +P+ R+ P W+K + + E I L KKGL PSQIG LRDS G+ V
Sbjct: 1 MIGKRKGIASSLIPFERNAPLWVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLV 60
Query: 249 RFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIH 70
+ + G+ I++I+K GL P++PEDL++LIKKA+ ++KHLERN+KDKDSKFRLIL ES+IH
Sbjct: 61 KNIAGRNIVKILKKNGLNPEIPEDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIH 120
Query: 69 RLARYYKTKSVLPPNWKYESS 7
RL+RYYK +P NW+++SS
Sbjct: 121 RLSRYYKRIQRIPINWRFDSS 141
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 149 bits (362), Expect = 3e-35
Identities = 70/146 (47%), Positives = 101/146 (69%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
M RM A +G S S P R+ VP W++ + V++ + +L KKG +QIG++LRD++G+
Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
V+ +TGKKI +IMK GL P +PEDL L+++AV +RKHLE++ KD SK L L+ES
Sbjct: 61 PDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIES 120
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
+I RL +YYK+K VLP +W+Y TA
Sbjct: 121 KIRRLVKYYKSKGVLPADWRYTPETA 146
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 133 bits (322), Expect = 2e-30
Identities = 60/140 (42%), Positives = 86/140 (61%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
M +M + GKG S S PY + PTWL D++K + ++G KG+ IG LRD +G+
Sbjct: 1 MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYGI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
+ V G+ I R ++ G+ P +P DL L+ +A +R HL RKD +K+RLILV S
Sbjct: 61 GKASDVLGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVSS 120
Query: 78 RIHRLARYYKTKSVLPPNWK 19
R++R+ARYYK K +P NWK
Sbjct: 121 RMYRVARYYKRKMRIPGNWK 140
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 132 bits (319), Expect = 4e-30
Identities = 65/141 (46%), Positives = 95/141 (67%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
M R+ A +G S S YR S P W+ + ++V++++ +L +G PS IG++LRD +G+
Sbjct: 1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
V+ VTGKKI +I+K G+ PEDL LIKKA+ +R HLE +RKDK ++ L L+E+
Sbjct: 61 PSVKQVTGKKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEA 120
Query: 78 RIHRLARYYKTKSVLPPNWKY 16
+I RL+ YYK K VLP +WKY
Sbjct: 121 KIWRLSSYYKEKGVLPADWKY 141
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 125 bits (301), Expect = 6e-28
Identities = 65/153 (42%), Positives = 95/153 (62%), Gaps = 7/153 (4%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
M RM A +G S S P R + P WL+ +D++ + KL K+G + + IG +LRD +G+
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGI 60
Query: 258 AQVRFVT-----GKK--ILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKF 100
V+ +K I RI++ GLAP++PEDL +LIK+AV +RKHLE++ KD S
Sbjct: 61 PTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMR 120
Query: 99 RLILVESRIHRLARYYKTKSVLPPNWKYESSTA 1
L L+ES+I RL +YYK K LP +W+Y+ A
Sbjct: 121 GLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQA 153
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 124 bits (299), Expect = 1e-27
Identities = 58/137 (42%), Positives = 84/137 (61%)
Frame = -3
Query: 411 GISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGK 232
G S S P R + P W + V+ +I +L K+G +P+ IG++LRD +G+ VR GK
Sbjct: 12 GQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGK 71
Query: 231 KILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYY 52
+ ++ GL PD+P DL YL+K+A + KH+E N +D +K L+ S+IHRLA+YY
Sbjct: 72 SLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYY 131
Query: 51 KTKSVLPPNWKYESSTA 1
K K VLP +WKY A
Sbjct: 132 KRKGVLPKDWKYSIEIA 148
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 124 bits (298), Expect = 1e-27
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKG-LTPSQIGVMLRDSHG 262
MG+M + GKGIS + +PYR+ W L ++ + I L K L PS+IG++LRD
Sbjct: 1 MGKMYSKGKGISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEKL 60
Query: 261 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 82
V R ++G I +I++ GL P +PEDL+YLIKKA ++ HL + D +++ L L+E
Sbjct: 61 VVDTRNISGMNISKILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRYHLNLIE 120
Query: 81 SRIHRLARYYKTKSVLPPNWKYESS 7
S I+RL+RYYK LP NWKY S+
Sbjct: 121 SHIYRLSRYYKRIFRLPKNWKYISN 145
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 123 bits (296), Expect = 3e-27
Identities = 59/146 (40%), Positives = 90/146 (61%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
MGR+ + G S S P P+W++ +V++ I K K+GL PSQIG LRD H +
Sbjct: 1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAI 59
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
R +TGK + +IM+ G P+LPEDL +++KAV +++HL N+ D+ + L L+E+
Sbjct: 60 PLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEA 119
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
++HRL YYK +P +WKY+S A
Sbjct: 120 KVHRLDVYYKRIGRIPKDWKYKSVVA 145
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 122 bits (293), Expect = 6e-27
Identities = 57/146 (39%), Positives = 88/146 (60%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
MGRM G S S P P+W+ +++E + K K GLTPSQIG+ LRD H +
Sbjct: 1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
++ +T K I I++ L ++PEDL ++KKAV +++HL+ N+ D+ + L L+E+
Sbjct: 61 PLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEA 120
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
++HRL+ YYK +P WKY+S A
Sbjct: 121 KVHRLSVYYKKIGRIPATWKYKSVVA 146
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 108 bits (260), Expect = 6e-23
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = -3
Query: 201 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 22
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFRLI+VESRIHRLARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 21 K 19
K
Sbjct: 129 K 129
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 105 bits (251), Expect = 7e-22
Identities = 54/142 (38%), Positives = 81/142 (57%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
M RM +G S S R P+W++ D++KE I K+ K+G+T S IG+ LRD + +
Sbjct: 1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
R V K+ +++K L D+PEDL LI++ KHL N+ D ++K + L+ S
Sbjct: 61 PGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMS 120
Query: 78 RIHRLARYYKTKSVLPPNWKYE 13
++ RL RYYK S LP +W E
Sbjct: 121 KMLRLIRYYKRTSRLPQDWSLE 142
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 104 bits (249), Expect = 1e-21
Identities = 52/142 (36%), Positives = 80/142 (56%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
M RM A +G S S+ P+ P W +++ I + K G++ +QIG +LRD H V
Sbjct: 1 MARMYASKRGKSGSSKPFMTEAPEWSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAV 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
VR V GK+I ++ + PEDL L+++AVA+ +HL N +D +K L L E+
Sbjct: 61 PNVRLVLGKRIGAVLSENDESGTYPEDLMNLMRQAVAIIEHLTTNSRDLHNKRSLELTEA 120
Query: 78 RIHRLARYYKTKSVLPPNWKYE 13
+I RL YYK + L +W+Y+
Sbjct: 121 KIRRLGNYYKAEGRLDSDWRYK 142
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 91.1 bits (216), Expect = 1e-17
Identities = 43/59 (72%), Positives = 48/59 (81%)
Frame = -3
Query: 447 AANMGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRD 271
AA GR+ PGKG+S+SAL Y SVPTWLKL D+VKEQIYKL KKGLTP QIGV+LRD
Sbjct: 211 AAITGRIHVPGKGLSRSALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 89.4 bits (212), Expect = 4e-17
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDS--H 265
M RM +G S S P P W + D ++ ++ +L ++G +PS+IG+ LRD
Sbjct: 1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQ 60
Query: 264 G--VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLI 91
G + V TGKK+ I++ PDLPEDL L+++AV +R H++ N D +K L
Sbjct: 61 GTPIPDVSLATGKKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQ 120
Query: 90 LVESRIHRLARYYKTKSVLPPNWKYESSTA 1
+S+I RL YY+ V N+ Y A
Sbjct: 121 NTQSKIRRLIDYYRGDEV-DENFTYSYDNA 149
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 60.9 bits (141), Expect = 2e-08
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = -3
Query: 447 AANMGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVK 337
+A +GRM APGKG+SQSALPYRRSV WLKL DDVK
Sbjct: 441 SAIVGRMHAPGKGLSQSALPYRRSVLMWLKLMSDDVK 477
>UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7;
Eurotiomycetidae|Rep: Ribosomal protein S15, putative -
Aspergillus clavatus
Length = 306
Score = 35.1 bits (77), Expect = 0.88
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -3
Query: 168 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 16
L K + + +HL+ KDK +K L L+ + +L RY + K P W++
Sbjct: 238 LTAKIINLSRHLQSTNKDKHNKRNLRLLVHKRQKLLRYLRKKERGGPRWQH 288
>UniRef50_Q6CWX5 Cluster: Similar to sp|Q9C2M3 Neurospora crassa
Related to kinesin-like protein KIF1C; n=1;
Kluyveromyces lactis|Rep: Similar to sp|Q9C2M3
Neurospora crassa Related to kinesin-like protein KIF1C
- Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 456
Score = 34.7 bits (76), Expect = 1.2
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = -3
Query: 444 ANMGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSH 265
+ +GR + S+ +PYR S+ TW+ +KE + K + + L +S
Sbjct: 245 STLGRCISQLAKNSKHLIPYRDSLLTWV------LKENLGGNSKTCMIACISPIDLEES- 297
Query: 264 GVAQVRFVTGKKILRIMKAMG-LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 106
++ +R+ T K +++ M + P++ ED+ ++ A + RK LE + + S
Sbjct: 298 -LSTLRYATTAKEIKLRATMNEIVPNINEDMKAAVEAAASSRKELEMLKSEMSS 350
>UniRef50_Q8FV54 Cluster: Ribose ABC transporter, periplasmic
D-ribose-binding protein; n=4; Rhizobiales|Rep: Ribose
ABC transporter, periplasmic D-ribose-binding protein -
Brucella suis
Length = 355
Score = 33.5 bits (73), Expect = 2.7
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -3
Query: 378 SVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVR 247
+VPTW+K D + +++ +L K+GL +M+ D+ G AQ +
Sbjct: 57 AVPTWMKQTEDTIVDEVAQLKKEGLVKD---LMITDAQGNAQTQ 97
>UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2;
Cryptosporidium|Rep: 3CCCH domain containing protein -
Cryptosporidium parvum Iowa II
Length = 591
Score = 33.5 bits (73), Expect = 2.7
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = -3
Query: 369 TWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPD 190
T L++ D K + + K G+ GV+ R +HG A++R T K +LR K L P
Sbjct: 154 TELRVTNDFYKTSVCRYWKMGVK-CDAGVLCRHAHGEAELRKKTNKHLLR-RKDDQLPPS 211
Query: 189 LPED 178
+ ED
Sbjct: 212 IRED 215
>UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisiae
MRPS28: YDR337w. precursor; n=1; Aspergillus niger|Rep:
Remark: alternate name for S. cerevisiae MRPS28:
YDR337w. precursor - Aspergillus niger
Length = 280
Score = 33.1 bits (72), Expect = 3.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 168 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 19
L K + + +HL+ +KD+ +K L L+ + +L RY + K P W+
Sbjct: 212 LTAKIMNLSRHLQTTKKDRHNKRNLRLLVHKRQKLLRYLRRKERGGPRWQ 261
>UniRef50_Q8G0I1 Cluster: Putative uncharacterized protein; n=3;
Brucella|Rep: Putative uncharacterized protein -
Brucella suis
Length = 276
Score = 32.7 bits (71), Expect = 4.7
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -3
Query: 375 VPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQV 250
+PTWL L ++ Y+L K +TP+ IG+ + + G++++
Sbjct: 149 LPTWLGLRRGKLRPLYYRLIHKEVTPASIGITVFGNDGISRL 190
>UniRef50_A7PK49 Cluster: Chromosome chr15 scaffold_19, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr15 scaffold_19, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 602
Score = 32.7 bits (71), Expect = 4.7
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 411 GISQSALPYRRSVPTWLKLXXDDVKEQIYK-LGKKGLTPSQIGVMLRDSHGVAQVRFVTG 235
G S +A+ Y + ++K+ D +Y+ + KKG+ P I + S R G
Sbjct: 79 GFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDG 138
Query: 234 KKILRIMKAMGLAPD 190
++L+ + +GL PD
Sbjct: 139 DRLLKDISVLGLLPD 153
>UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=1;
Azoarcus sp. EbN1|Rep: Helicase/SNF2 family domain
protein - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 883
Score = 32.3 bits (70), Expect = 6.2
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 336 EQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVT-GKKILRIMKAMGLAPDLPEDLYYLI 163
+++ +L + G T S V LR+ H V + + +K+ IM A+G A D PEDL L+
Sbjct: 563 QRVGRLNRYGQTQSVEVVSLRNPHTVESMIWEKLEEKLGNIMLALGSAMDEPEDLLQLV 621
>UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3;
Alphaproteobacteria|Rep: 3-dehydroquinate synthase -
Parvularcula bermudensis HTCC2503
Length = 371
Score = 32.3 bits (70), Expect = 6.2
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = -3
Query: 234 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
K++ R++ GL P P+D+ LI A R +++++K + + RL+L+E+
Sbjct: 291 KRVERMIADSGL-PTRPQDIPGLITSAAEQRAFMQQDKKVEAGQLRLVLLEA 341
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,483,581
Number of Sequences: 1657284
Number of extensions: 8903685
Number of successful extensions: 21783
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21777
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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