Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d17r
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   230   8e-62
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    30   0.22 
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   0.90 
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.6  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   4.8  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   4.8  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   6.3  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  230 bits (563), Expect = 8e-62
 Identities = 107/146 (73%), Positives = 122/146 (83%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM + GKGI+ SALPY RS P W K   D V EQI K  KKG++PSQIGV LRDSHG+
Sbjct: 1   MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
            QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61  PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYY+    LPP WKYES+TA
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATA 146


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = -3

Query: 252 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 73
           +R    KK+   +KA G      EDL +L    +   +  +  +++K    RL ++  RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682

Query: 72  HRLARYYKTKSVLPPNWKYES 10
             L R Y+ +++  P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -3

Query: 141 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 40
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = -3

Query: 234 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 55
           KKI+ I     L      D YYL KKA  + +    N  +K+SK   I +E +  +    
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241

Query: 54  YKTKSVLPPNW 22
              +  L  +W
Sbjct: 242 VNLEKYLTKSW 252


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 406 LPVGAALPPQCPYLVEIXXRRCKGTNLQTWKEGSHSLTNWCNAEGFT 266
           +P G   PP  P ++    R+      Q W+    S++NW N +G+T
Sbjct: 222 VPRGPPSPP--PPVLHSPPRKVSAQEQQDWQIPP-SISNWKNPKGYT 265


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -3

Query: 237 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 112
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 171 SKDPPVSQEL---DPLPS*YGGSFCQLRILLGQLHVNPS 278
           S  P V+QE+    P PS  GGS  Q  + L + H +PS
Sbjct: 129 SNTPIVTQEMLAQHPPPSTVGGSSSQEFVKLEEKHYSPS 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,828
Number of Sequences: 5004
Number of extensions: 36911
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)