Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d17r
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)        210   6e-55
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)                28   4.9  
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)              28   4.9  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 27   8.6  
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               27   8.6  

>SB_45199| Best HMM Match : Ribosomal_S15 (HMM E-Value=1.5e-21)
          Length = 135

 Score =  210 bits (512), Expect = 6e-55
 Identities = 97/116 (83%), Positives = 107/116 (92%)
 Frame = -3

Query: 366 WLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 187
           W KL  DDVKEQ+YKL KKGLTPSQIGV+LRDS+GVAQVR++TG KILRI+KA GLAP L
Sbjct: 20  WQKLTSDDVKEQMYKLAKKGLTPSQIGVILRDSYGVAQVRYITGNKILRILKAKGLAPSL 79

Query: 186 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 19
           PEDLY LIKKAVA+RKHLE+NRKDKDSKFRLIL+ESRIHRLARY+KTK VLPPNWK
Sbjct: 80  PEDLYCLIKKAVAVRKHLEKNRKDKDSKFRLILIESRIHRLARYFKTKRVLPPNWK 135


>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 285 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKK 157
           V L D HG + +   + + + RI++AM      PED   L KK
Sbjct: 211 VTLVDDHGYSAMDVTSSQSVRRILRAMPGLFQKPEDQLQLTKK 253


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 202 THCLHDTEDLFASYESYLGNSM*IPQHYTNL*G-SETLLSKFVNLF 336
           T+    T  L A+Y +    +  +P +YTNL   + T L+ + NLF
Sbjct: 160 TNLFAPTHSLLANYTNLFAPTHSLPANYTNLFAPTHTTLANYTNLF 205


>SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)
          Length = 733

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 218 IRRIFLPVTNLTWATPCESLSITPI 292
           +RRI LP+TN  + T  E+L +T +
Sbjct: 683 VRRIILPLTNRIYLTGSEALKVTQL 707


>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
          Length = 763

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 324 KLGKKGLTPSQIGVMLRD 271
           KL K+GL+PSQI V+ RD
Sbjct: 465 KLNKEGLSPSQIYVLARD 482


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -3

Query: 408 ISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVM--LRDSHGVAQVRFVTG 235
           +S   LP +RS+  + +L  D    ++    K       + V+  + D  G A    + G
Sbjct: 745 LSHDDLPAQRSLGVYWELRSDSFAYRVSPPDKPFTRRGVLSVVNSVYDPLGHAAPVMLQG 804

Query: 234 KKILRIMKAMGLAPD 190
           KKIL+ + AMG  P+
Sbjct: 805 KKILQRLVAMGKKPE 819


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 195 PDLPEDLYYL-IKKAVAMRKHLE-RNRKDKDSKFRLILVESRIHRLARYY 52
           PD+P+D YYL +  +++M   L     KD   K   +L++     L  Y+
Sbjct: 146 PDIPDDNYYLSLSTSISMASVLSGSEEKDNFLKLCRLLIDGGTKSLLTYF 195


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = -3

Query: 213 KAMGLAPDLPEDLYYLIKKAVAMRKHL---ERNRKDKDSKFRLILVESRIHRLARYYKTK 43
           +A G+APD P +L  LIK+ + + +     +  R+ K+   +    + R+  + R  +TK
Sbjct: 124 RASGIAPDEPSELDQLIKQIIELEETTVPEDSQRQAKEKANKAKAEDVRLTAMERLSQTK 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,830,907
Number of Sequences: 59808
Number of extensions: 294976
Number of successful extensions: 615
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)