Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d17r
         (497 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X79239-1|CAA55821.1|  151|Homo sapiens ribosomal protein S13 pro...   280   2e-75
L01124-1|AAA60283.1|  151|Homo sapiens ribosomal protein S13 pro...   280   2e-75
D88010-1|BAA13528.1|  151|Homo sapiens ribosomal protein S13 pro...   280   2e-75
BC100032-1|AAI00033.1|  151|Homo sapiens ribosomal protein S13 p...   280   2e-75
BC066322-1|AAH66322.1|  151|Homo sapiens ribosomal protein S13 p...   280   2e-75
BC029732-1|AAH29732.1|  151|Homo sapiens ribosomal protein S13 p...   280   2e-75
BC006772-1|AAH06772.1|  151|Homo sapiens ribosomal protein S13 p...   280   2e-75
BC000475-1|AAH00475.1|  151|Homo sapiens ribosomal protein S13 p...   280   2e-75
L05090-1|AAC15854.1|  116|Homo sapiens ribosomal protein S13 pro...   216   4e-56

>X79239-1|CAA55821.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  280 bits (686), Expect = 2e-75
 Identities = 131/146 (89%), Positives = 139/146 (95%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM APGKG+SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
           AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146


>L01124-1|AAA60283.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  280 bits (686), Expect = 2e-75
 Identities = 131/146 (89%), Positives = 139/146 (95%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM APGKG+SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
           AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146


>D88010-1|BAA13528.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  280 bits (686), Expect = 2e-75
 Identities = 131/146 (89%), Positives = 139/146 (95%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM APGKG+SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
           AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146


>BC100032-1|AAI00033.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  280 bits (686), Expect = 2e-75
 Identities = 131/146 (89%), Positives = 139/146 (95%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM APGKG+SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
           AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146


>BC066322-1|AAH66322.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  280 bits (686), Expect = 2e-75
 Identities = 131/146 (89%), Positives = 139/146 (95%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM APGKG+SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
           AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146


>BC029732-1|AAH29732.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  280 bits (686), Expect = 2e-75
 Identities = 131/146 (89%), Positives = 139/146 (95%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM APGKG+SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
           AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146


>BC006772-1|AAH06772.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  280 bits (686), Expect = 2e-75
 Identities = 131/146 (89%), Positives = 139/146 (95%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM APGKG+SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
           AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146


>BC000475-1|AAH00475.1|  151|Homo sapiens ribosomal protein S13
           protein.
          Length = 151

 Score =  280 bits (686), Expect = 2e-75
 Identities = 131/146 (89%), Positives = 139/146 (95%)
 Frame = -3

Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
           MGRM APGKG+SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGV
Sbjct: 1   MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60

Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
           AQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ES
Sbjct: 61  AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120

Query: 78  RIHRLARYYKTKSVLPPNWKYESSTA 1
           RIHRLARYYKTK VLPPNWKYESSTA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTA 146


>L05090-1|AAC15854.1|  116|Homo sapiens ribosomal protein S13
           protein.
          Length = 116

 Score =  216 bits (527), Expect = 4e-56
 Identities = 103/116 (88%), Positives = 110/116 (94%)
 Frame = -3

Query: 405 SQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKI 226
           SQSALPYRRSVPTWLKL  DDVKEQIYKL KKGLTPSQIGV+LRDSHGVAQVRFVTG KI
Sbjct: 1   SQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKI 60

Query: 225 LRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 58
           LRI+K+ GLA DLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLAR
Sbjct: 61  LRILKSKGLASDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLAR 116


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,876,488
Number of Sequences: 237096
Number of extensions: 1368229
Number of successful extensions: 2912
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)