Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d17r
(497 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal prote... 231 2e-61
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 27 5.7
AY825249-1|AAX24101.1| 728|Caenorhabditis elegans sodium-couple... 27 7.6
AL110485-24|CAB60372.4| 728|Caenorhabditis elegans Hypothetical... 27 7.6
Z82093-2|CAB05019.1| 213|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 27 10.0
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 27 10.0
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 27 10.0
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 27 10.0
>U41534-2|AAB47594.1| 151|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 13 protein.
Length = 151
Score = 231 bits (565), Expect = 2e-61
Identities = 105/146 (71%), Positives = 127/146 (86%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
MGRM PGKG+++SA+PYRRSVP+W K+ ++V++QI K+ KKGL PSQIGV+LRDSHGV
Sbjct: 1 MGRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHGV 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
QVR + G KI RI+K+ G+AP+LPEDLY+L+KKAVA+RKHLER+RKD DSK+RLILVES
Sbjct: 61 GQVRRLAGNKIFRILKSKGMAPELPEDLYHLVKKAVAIRKHLERSRKDIDSKYRLILVES 120
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
RIHRLARYYKTK LPP WKYES TA
Sbjct: 121 RIHRLARYYKTKRQLPPTWKYESGTA 146
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 331 NLQTWKEGSHSLTNWCNAEGFTW 263
N++TW + LTN NA G W
Sbjct: 467 NIETWDKAEADLTNALNASGRKW 489
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 331 NLQTWKEGSHSLTNWCNAEGFTW 263
N++TW + LTN NA G W
Sbjct: 508 NIETWDKAEADLTNALNASGRKW 530
>AY825249-1|AAX24101.1| 728|Caenorhabditis elegans sodium-coupled
neutral amino acidtransporter protein.
Length = 728
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 77 GFTDWPVITKLRVCFLLTG 21
GF +WPV + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302
>AL110485-24|CAB60372.4| 728|Caenorhabditis elegans Hypothetical
protein Y46G5A.30 protein.
Length = 728
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 77 GFTDWPVITKLRVCFLLTG 21
GF +WPV + VC+LLTG
Sbjct: 285 GF-NWPVFAAMSVCWLLTG 302
>Z82093-2|CAB05019.1| 213|Caenorhabditis elegans Hypothetical
protein ZK39.3 protein.
Length = 213
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 343 CKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNWQKDP 224
C TN TW +GS S T GF W +++K P
Sbjct: 125 CTATNSFTWTDGSTSGT-----AGFVWDSRQPDNDYKKQP 159
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 183 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 58
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 183 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 58
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 165 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 206
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 207 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 61
M L+ P D+ L+ + +RK L+R + +K F + + S I +LA
Sbjct: 1 MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -3
Query: 207 MGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLA 61
M L+ P D+ L+ + +RK L+R + +K F + + S I +LA
Sbjct: 1 MWLSKQQPHDVNALLAEKQELRKQLDREQNEKQELF--MQINSMIAKLA 47
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 183 EDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLAR 58
EDL LI+K VA ++ RKD ++ + H+LA+
Sbjct: 168 EDLRKLIQKTVADMNVMDEQRKDDFKQYEMKKQAEEDHKLAQ 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,156
Number of Sequences: 27780
Number of extensions: 207924
Number of successful extensions: 415
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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