Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d17r
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 322 FVNLFLYIVGXQFQPGR 372
           FVN FL+++  Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 322 FVNLFLYIVGXQFQPGR 372
           FVN FL+++  Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 322 FVNLFLYIVGXQFQPGR 372
           FVN FL+++  Q   GR
Sbjct: 16  FVNSFLFVIAAQDSSGR 32


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 177 LYYLIKKAVAMRKHLERNRKD 115
           LYY + K +  R  LER   D
Sbjct: 260 LYYFLHKQLMTRYFLERMSND 280


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 177 LYYLIKKAVAMRKHLERNRKD 115
           LYY + K +  R  LER   D
Sbjct: 260 LYYFLHKQLMTRYFLERMSND 280


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 132 ERNRKDKDSKFRLILVESRIHRLARYYKTKSV 37
           +R RK+ DSK   + ++   H L  ++K   V
Sbjct: 492 QRLRKELDSKTGGVNLKGHAHWLTLHFKDPKV 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,732
Number of Sequences: 438
Number of extensions: 2424
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)