Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d17r
(497 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi... 235 2e-62
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP... 235 2e-62
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot... 31 0.57
At1g65720.1 68414.m07459 expressed protein 29 1.3
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 4.0
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi... 27 5.3
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 27 7.0
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put... 27 7.0
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 27 9.3
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi... 27 9.3
>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
to ribosomal protein S13; PF00312 (View Sanger Pfam):
ribosomal protein S15; identical to cDNA AtRPS13A mRNA
for cytoplasmic ribosomal protein S13 GI:6521011
Length = 151
Score = 235 bits (574), Expect = 2e-62
Identities = 112/146 (76%), Positives = 124/146 (84%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
MGRM + GKGIS SALPY+RS P+WLK DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
RIHRLARYYK LPP WKYES+TA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTA 146
>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
Arabidopsis thaliana,AB031739
Length = 151
Score = 235 bits (574), Expect = 2e-62
Identities = 112/146 (76%), Positives = 124/146 (84%)
Frame = -3
Query: 438 MGRMXAPGKGISQSALPYRRSVPTWLKLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 259
MGRM + GKGIS SALPY+RS P+WLK DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 78 RIHRLARYYKTKSVLPPNWKYESSTA 1
RIHRLARYYK LPP WKYES+TA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTA 146
>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase II (CP-MII)
GB:CAA70815 [Hordeum vulgare]
Length = 459
Score = 30.7 bits (66), Expect = 0.57
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 402 GRYPYQERAYDPCLRLFT 455
GRYP+ RAYDPC ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317
>At1g65720.1 68414.m07459 expressed protein
Length = 180
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 230 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSXXNFNQVGTLRR 385
FL +T +T A PC++ I+ + P P+L FTS+ F V T+RR
Sbjct: 16 FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 191 SGARPIAFMIRRIFLPVTNLTWATPCESLSITP 289
+ R I +++RR+ LP+ N + PC L+ P
Sbjct: 212 ASGRQITWLLRRLTLPIRNALFEEPCLFLNSHP 244
>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 723
Score = 27.5 bits (58), Expect = 5.3
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = -3
Query: 258 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 79
A VR K+ K M + +P+ Y +A+ K +NRKDK + L ++ S
Sbjct: 634 AFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINS 691
Query: 78 RIHRLARYYKTKSVLPPNWKYESS 7
+ R+ KTK WKY+++
Sbjct: 692 KFGRVKA--KTKGKKDEFWKYKTN 713
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 337 GTNLQTWKEGSHSLTNWCNAE 275
GTN ++ KE SLT+W AE
Sbjct: 70 GTNNESMKETGQSLTSWVEAE 90
>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 793
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 238 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 333
+YESY+G M + QHY + S+T L V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -3
Query: 411 GISQSALPYRRSVPTWL-KLXXDDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 235
GI+ + Y + K DD+ +L K G P I + FV G
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247
Query: 234 KKILRIMKAMGLAPDL 187
+I +MK+ L+P++
Sbjct: 248 DRIWDLMKSKNLSPNI 263
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P46825 Kinesin light chain
(KLC) {Loligo pealeii}; contains Pfam profile PF00515:
TPR Domain
Length = 1797
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = -2
Query: 439 HGSYARSW*GYLPVGAALPPQCPYLVEIXXRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 260
+G A +W +P AA P + + R G ++GS+ L W N F S
Sbjct: 278 YGFRANTW--LIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIAS 335
Query: 259 CPSK 248
P K
Sbjct: 336 MPCK 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,311,171
Number of Sequences: 28952
Number of extensions: 197836
Number of successful extensions: 491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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