Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d17f
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 244 7e-66
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 30 0.25
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 28 1.0
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 1.8
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 27 1.8
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 26 3.1
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.4
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 25 7.2
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 9.5
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 244 bits (597), Expect = 7e-66
Identities = 114/151 (75%), Positives = 129/151 (85%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 239
MGRMH+ GKGI+ SALPY RS P W K AD V EQI K KKG++PSQIGV LRDSHG+
Sbjct: 1 MGRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHGI 60
Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+ES
Sbjct: 61 PQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIES 120
Query: 420 RIHRLARYYKTKSVLPPNWKYESSTASALVA 512
RIHRLARYY+ LPP WKYES+TASALVA
Sbjct: 121 RIHRLARYYRKVGALPPTWKYESATASALVA 151
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 29.9 bits (64), Expect = 0.25
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +3
Query: 246 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 425
+R KK+ +KA G EDL +L + + + +++K RL ++ RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682
Query: 426 HRLARYYKTKSVLPPNWKYES 488
L R Y+ +++ P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 357 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 458
K+ R +K+ D ++ +LVESR+H L R+ +K+
Sbjct: 32 KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.8
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +3
Query: 264 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 443
KKI+ I L D YYL KKA + + N +K+SK I +E + +
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241
Query: 444 YKTKSVLPPNW 476
+ L +W
Sbjct: 242 VNLEKYLTKSW 252
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 1.8
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +3
Query: 144 TADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 317
++DD Q + L QIG+ L D G A V T + L D+ PE
Sbjct: 66 SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121
Query: 318 DLYYLIKKAVAMRKHLE 368
+ L K + +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 3.1
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = -1
Query: 191 TLLSKFVNLFLYIVGSQFQPGRDTAAVRQRRLGDTLTRSVHTTHVCGFLLNR 36
TL+SK FL+ Q Q AV QR D L SV + V +LNR
Sbjct: 145 TLVSKVHPNFLFDSDVQSQHITRDEAVNQRLQDDPLVSSVGSLQVFSDMLNR 196
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 261 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 386
G+ + ++ A + PE+L+ +KK+ + +K + K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -3
Query: 327 SKDPPVSQEL---DPLPS*YGGSFCQLRILLGQLHVNPS 220
S P V+QE+ P PS GGS Q + L + H +PS
Sbjct: 129 SNTPIVTQEMLAQHPPPSTVGGSSSQEFVKLEEKHYSPS 167
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 92 LPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFT 232
+P G PP P ++ R+ Q W+ S++NW N +G+T
Sbjct: 222 VPRGPPSPP--PPVLHSPPRKVSAQEQQDWQIPP-SISNWKNPKGYT 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,442
Number of Sequences: 5004
Number of extensions: 43410
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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