Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d17f
(536 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 220 7e-58
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 198 3e-51
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 192 2e-49
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 144 5e-35
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 30 1.3
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 29 2.3
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568... 29 2.3
08_01_0010 + 80052-81419 28 5.4
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 7.2
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 9.5
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 220 bits (537), Expect = 7e-58
Identities = 102/140 (72%), Positives = 117/140 (83%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 239
MGRMH+ GKGIS SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+
Sbjct: 1 MGRMHSRGKGISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60
Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 420 RIHRLARYYKTKSVLPPNWK 479
RIHRLARYYK LPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 198 bits (482), Expect = 3e-51
Identities = 90/140 (64%), Positives = 113/140 (80%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 239
MGRMH+ GKG+S S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V
Sbjct: 1 MGRMHSSGKGMSCSVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAV 60
Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
+ VTG KILR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILVES
Sbjct: 61 PLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVES 120
Query: 420 RIHRLARYYKTKSVLPPNWK 479
R+HRL RYY+ +P +K
Sbjct: 121 RVHRLTRYYRLAKKIPAFFK 140
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 192 bits (467), Expect = 2e-49
Identities = 98/149 (65%), Positives = 110/149 (73%), Gaps = 17/149 (11%)
Frame = +3
Query: 84 KGISQSALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIG 212
KGIS SALPY+R+ P+WLK A DV +E I K KKG PSQIG
Sbjct: 31 KGISSSALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIG 90
Query: 213 VMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDS 392
V+LRD HG+ V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDS
Sbjct: 91 VVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDS 150
Query: 393 KFRLILVESRIHRLARYYKTKSVLPPNWK 479
KFRLILVESRIHRLARYYK LPP WK
Sbjct: 151 KFRLILVESRIHRLARYYKRTKKLPPTWK 179
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 144 bits (348), Expect = 5e-35
Identities = 70/106 (66%), Positives = 80/106 (75%)
Frame = +3
Query: 153 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 332
+V+E I K K G SQIGV+LR HG+ V+ + KIL I+KA GLAP + EDLY+L
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148
Query: 333 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 470
IKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK LPP
Sbjct: 149 IKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 96 GRYPYQERAYDPCLRLFT 43
GRYP+ RAYDPC ++
Sbjct: 295 GRYPWLSRAYDPCTERYS 312
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 29.1 bits (62), Expect = 2.3
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = +3
Query: 99 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG-KKIL 275
S +PY T L D++K+Q+ + KG+T + V++ + QV KKI+
Sbjct: 216 SLVPYFLDEETGWGLEVDELKKQLEEAQSKGITVRAL-VVINPGNPTGQVLAEENQKKIV 274
Query: 276 RIMKAMG---LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
K G LA ++ ++ Y+ K K + R+ D L+ +S
Sbjct: 275 EFCKNEGLVLLADEVYQENIYVEDKKFHSFKKIARSMGYTDDDLPLVSFQS 325
>04_04_1209 +
31755637-31755821,31756017-31756165,31756703-31756845,
31756902-31757024
Length = 199
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Frame = +3
Query: 267 KILRIMKAMGL-APD--LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE----SRI 425
KI R+++A+ A D LP +L ++ AV MR R+RK+KD++ ++++E R
Sbjct: 105 KITRVLRAVHTGAHDRRLPGNLDKTVRVAV-MRPKTSRSRKEKDAEEEVLVIEGIERERE 163
Query: 426 HRLARY 443
HR Y
Sbjct: 164 HRGGEY 169
>08_01_0010 + 80052-81419
Length = 455
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 161 LYIVGSQFQPGRDTAAVRQRRLGDTLTRSVH 69
+++VG F R AAVR+ R G + R VH
Sbjct: 236 VFVVGVAFAVARHPAAVRELRAGPSRMRVVH 266
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 114 RRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 227
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 306 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 404
DLPE L++ AVA R LE++R D+ FR+
Sbjct: 24 DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,339,243
Number of Sequences: 37544
Number of extensions: 294998
Number of successful extensions: 764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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