Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d17f
(536 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) simi... 248 2e-66
At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A) AtRP... 247 3e-66
At3g07990.1 68416.m00976 serine carboxypeptidase S10 family prot... 31 0.64
At1g65720.1 68414.m07459 expressed protein 29 1.5
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi... 28 4.5
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 28 4.5
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 4.5
At2g28340.1 68415.m03444 zinc finger (GATA type) family protein ... 28 4.5
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 27 6.0
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,... 27 6.0
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 27 7.9
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put... 27 7.9
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 27 7.9
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi... 27 7.9
>At4g00100.1 68417.m00010 40S ribosomal protein S13 (RPS13A) similar
to ribosomal protein S13; PF00312 (View Sanger Pfam):
ribosomal protein S15; identical to cDNA AtRPS13A mRNA
for cytoplasmic ribosomal protein S13 GI:6521011
Length = 151
Score = 248 bits (607), Expect = 2e-66
Identities = 118/151 (78%), Positives = 131/151 (86%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 239
MGRMH+ GKGIS SALPY+RS P+WLK T+ DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 420 RIHRLARYYKTKSVLPPNWKYESSTASALVA 512
RIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
>At3g60770.1 68416.m06798 40S ribosomal protein S13 (RPS13A)
AtRPS13A mRNA for cytoplasmic ribosomal protein S13,
Arabidopsis thaliana,AB031739
Length = 151
Score = 247 bits (605), Expect = 3e-66
Identities = 118/151 (78%), Positives = 130/151 (86%)
Frame = +3
Query: 60 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGV 239
MGRMH+ GKGIS SALPY+RS P+WLK T DV E I K KKGLTPSQIGV+LRDSHG+
Sbjct: 1 MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60
Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVES
Sbjct: 61 PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
Query: 420 RIHRLARYYKTKSVLPPNWKYESSTASALVA 512
RIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
>At3g07990.1 68416.m00976 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase II (CP-MII)
GB:CAA70815 [Hordeum vulgare]
Length = 459
Score = 30.7 bits (66), Expect = 0.64
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 96 GRYPYQERAYDPCLRLFT 43
GRYP+ RAYDPC ++
Sbjct: 300 GRYPWMSRAYDPCTERYS 317
>At1g65720.1 68414.m07459 expressed protein
Length = 180
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -2
Query: 268 FLPVTNLTWATPCESLSITPICEGVRPFFPSL*ICSFTSSAVNFNQVGTLRR 113
FL +T +T A PC++ I+ + P P+L FTS+ F V T+RR
Sbjct: 16 FLSITTITTARPCKTFLISSYSLSITPENPNL-ESDFTST--RFVTVFTIRR 64
>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 723
Score = 27.9 bits (59), Expect = 4.5
Identities = 24/88 (27%), Positives = 41/88 (46%)
Frame = +3
Query: 240 AQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 419
A VR K+ K M + +P+ Y +A+ K +NRKDK + L ++ S
Sbjct: 634 AFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKLRAILEDKAKTKNRKDKTA--ILGIINS 691
Query: 420 RIHRLARYYKTKSVLPPNWKYESSTASA 503
+ R+ KTK WKY+++ ++
Sbjct: 692 KFGRVKA--KTKGKKDEFWKYKTNRTTS 717
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/39 (30%), Positives = 15/39 (38%)
Frame = +2
Query: 146 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPSKIRNW 262
C C TN W+ G CNA G W + N+
Sbjct: 7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGTLVNY 45
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 307 SGARPIAFMIRRIFLPVTNLTWATPCESLSITP 209
+ R I +++RR+ LP+ N + PC L+ P
Sbjct: 212 ASGRQITWLLRRLTLPIRNALFEEPCLFLNSHP 244
>At2g28340.1 68415.m03444 zinc finger (GATA type) family protein
and genefinder
Length = 315
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 140 IDCRRCKGTNLQTWKEGSHSLTNWCNAEG 226
+ C C+ T W+EG + CNA G
Sbjct: 215 LKCTHCETTTTPQWREGPNGRKTLCNACG 243
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 27.5 bits (58), Expect = 6.0
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +3
Query: 87 GISQSALPYRRSVPTWL-KLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG 263
GI+ + Y + K + DD+ +L K G P I + FV G
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEG 247
Query: 264 KKILRIMKAMGLAPDL 311
+I +MK+ L+P++
Sbjct: 248 DRIWDLMKSKNLSPNI 263
>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 793
Score = 27.5 bits (58), Expect = 6.0
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +3
Query: 261 GKKILRIMKAMGLAPD--LPEDLYYLIKKAVAMRKHLERNRKDK---DSKFRLILVESRI 425
G + L + +++GL L DL +KK M+K + D KF +
Sbjct: 170 GSQCLSVFRSIGLPSTTVLIRDLPSDVKKKNEMKKMCASQLASEFPEDCKFYPADTRDEL 229
Query: 426 HRLARYYKTKSVLPPNWKYESSTASALVA*VLINN 530
H+ +K + + P+W+ + S A A +L+++
Sbjct: 230 HKFMWLFKAQRLTVPHWRSQRSYIVARKAGMLVDD 264
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 161 GTNLQTWKEGSHSLTNWCNAE 223
GTN ++ KE SLT+W AE
Sbjct: 70 GTNNESMKETGQSLTSWVEAE 90
>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 793
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 260 SYESYLGNSM*IPQHYTNL*GSETLLSKFVNL 165
+YESY+G M + QHY + S+T L V L
Sbjct: 308 NYESYVGQRMDVVQHYIHQAVSDTKLENPVLL 339
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 146 CRRCKGTNLQTWKEGSHSLTNWCNAEGFTWSCPS 247
C C G L K+GS ++ CN +G CP+
Sbjct: 232 CSTCYGRGLVAHKDGSDTICTNCNGKG-KLPCPT 264
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P46825 Kinesin light chain
(KLC) {Loligo pealeii}; contains Pfam profile PF00515:
TPR Domain
Length = 1797
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +2
Query: 59 HGSYARSW*GYLPVGAALPPQCPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 238
+G A +W +P AA P + ++ R G ++GS+ L W N F S
Sbjct: 278 YGFRANTW--LIPPTAAQSPAAFPPLPVEDERWGGDGGGQGRDGSYDLVPWSNEFAFIAS 335
Query: 239 CPSK 250
P K
Sbjct: 336 MPCK 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,461,941
Number of Sequences: 28952
Number of extensions: 231899
Number of successful extensions: 661
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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