Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d16r
         (696 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     25   3.0  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   4.0  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    24   5.3  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   9.2  

>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 427 KQRTTTGNKRCSIR*SYSHRRIWCQQKRLGRCY 329
           K R+ T   RC +R +  H+R W +      CY
Sbjct: 446 KNRSLTEMGRCMLRDAGMHKRFWAEAVNTA-CY 477


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -1

Query: 570  LKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 460
            L+ +KL + K H    ++   +  +  R  EGK+ R+
Sbjct: 972  LEEMKLAIEKAHEGSSSIKKEIVALQKREAEGKMKRL 1008


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 684 LTSGDYNVIVVDWSSFSLSTYSTAVM 607
           + SGD+N    +W S S +    AV+
Sbjct: 116 IISGDFNAWATEWGSKSTNARGNAVL 141


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -1

Query: 687  FLTSGDYNVIVVDWSS-FSLSTYSTAVMAVTG--VGSSIATFLKNLKLPLNKVHIVGFNL 517
            +L +G+  V ++D    F++    + V A  G  +G+S A    N      K  IVG  +
Sbjct: 2669 YLYAGNSPVSLIDPDGQFAILLIVSIVTAAVGAYLGASAANKSWNPAKWEVKKAIVGATM 2728

Query: 516  GAHVAGVTGRNLEGKVARITG 454
            GA V G     + G +  + G
Sbjct: 2729 GAIVGGFAPVGIAGSITFLAG 2749


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,241
Number of Sequences: 2352
Number of extensions: 15023
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70668195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)