Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d14r
         (617 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CDDFD Cluster: hypothetical protein TTHERM_0029...    35   1.4  
UniRef50_Q3Y3L4 Cluster: Transposase, IS204/IS1001/IS1096/IS1165...    32   9.5  

>UniRef50_UPI00006CDDFD Cluster: hypothetical protein TTHERM_00296010;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00296010 - Tetrahymena thermophila SB210
          Length = 2738

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 18/60 (30%), Positives = 34/60 (56%)
 Frame = +3

Query: 174  IVFKVVCKCSALLLPWRSRCVFKMALFHFIPFRKHNTNMPHNRLPVSINLLNSMQYLCSK 353
            I   +V  C  LLL + S  +F + + +F+P + +NT + +N + +SI+ +    YL S+
Sbjct: 2411 IYISIVLPCVFLLLIYISINLFFIGVEYFMPSQYYNTQIKYNNVNMSISTIIVFSYLASQ 2470


>UniRef50_Q3Y3L4 Cluster: Transposase, IS204/IS1001/IS1096/IS1165;
           n=14; Enterococcus faecium|Rep: Transposase,
           IS204/IS1001/IS1096/IS1165 - Enterococcus faecium DO
          Length = 431

 Score = 32.3 bits (70), Expect = 9.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 510 NYFSGCVTVERVNEKLTKFSFAFFRLTANIVPHCR 406
           +YF GC   E V   +T  + A+F+LT  I+P+ +
Sbjct: 208 SYFLGCANPEEVKFLVTDMNAAYFQLTKRILPNAK 242


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,411,213
Number of Sequences: 1657284
Number of extensions: 10232354
Number of successful extensions: 20518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20504
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)