Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d14r
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.7  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   4.7  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   8.3  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 113  YYLVVRLVSLVIIFFDLFQPFNVSY*T 33
            YY+ V  + L+++ + +F   NVS+ T
Sbjct: 1008 YYVTVPSMYLLLVIYSVFNMNNVSWGT 1034


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 113  YYLVVRLVSLVIIFFDLFQPFNVSY*T 33
            YY+ V  + L+++ + +F   NVS+ T
Sbjct: 1008 YYVTVPSMYLLLVIYSVFNMNNVSWGT 1034


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -2

Query: 295 CGIFVLCFRKGMKWKRAILKTH 230
           CG+F +C+ +     +A L++H
Sbjct: 150 CGLFSVCYPRVSAQMKADLRSH 171


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 507 YFSGCVTVERVNEKLTKF 454
           YF GCV    ++E++ KF
Sbjct: 94  YFVGCVESLLLSEEMPKF 111


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,376
Number of Sequences: 336
Number of extensions: 3178
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)