Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d14r
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm rece...    29   2.0  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AF067944-5|AAC17673.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 67 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 3   FPICQLIST-VSLIRNIKRLKQIEKYNHKTH*PHYQIVIIS*MSNIRLEIRLYVPNGGIV 179
           F  C +I T V + RN+K  K+++K++ +     YQ  +   M  I   I L +P G I+
Sbjct: 208 FSYCIIIFTCVQMHRNMK--KELKKFSTQNQKLEYQFFLALVMQTIGPTIFLIIPTGPIL 265

Query: 180 F-KVVCKCSALLLPWRSRCVFKMALFH 257
              ++     L + W++  ++ +  F+
Sbjct: 266 MTPLIAPIFELEVNWQTGNLYSLVGFY 292


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +3

Query: 48  IKRLKQIEKYNHKTH*PHYQIVIIS*MSNIRLEIRLYVPN-GGIVFKV 188
           + RL +IEKY+H  H  + + +++   S   ++IR++  N  G++F+V
Sbjct: 163 LARLNKIEKYHH--HVKNNREILLRSQSLAAMKIRIFFENRKGLIFEV 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,698
Number of Sequences: 27780
Number of extensions: 268203
Number of successful extensions: 576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)