Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d14r
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 22/64 (34%), Positives = 28/64 (43%)
 Frame = -2

Query: 331 LFNKLILTGNLLCGIFVLCFRKGMKWKRAILKTHRLLQGSSSALHLHTTLNTIPPLGTYR 152
           + N+L L+GN +  I  L FR     K   L  +  L     AL     L T+  LG   
Sbjct: 408 VLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNE-LTSVPDALRDLALLKTL-DLGE-N 464

Query: 151 RISN 140
           RISN
Sbjct: 465 RISN 468


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 379 LNNLQLLGEPTVRHYICS*AKEGETELCQFFIHSLHCDATREVV 510
           L   QLL +  + H +   A  G+  L    + SL C+   + +
Sbjct: 159 LTTSQLLKQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTM 202


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 379 LNNLQLLGEPTVRHYICS*AKEGETELCQFFIHSLHCDATREVV 510
           L   QLL +  + H +   A  G+  L    + SL C+   + +
Sbjct: 159 LTTSQLLKQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTM 202


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 379 LNNLQLLGEPTVRHYICS*AKEGETELCQFFIHSLHCDATREVV 510
           L   QLL +  + H +   A  G+  L    + SL C+   + +
Sbjct: 159 LTTSQLLKQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTNSDTM 202


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = +2

Query: 65  DRKI*SQDSLTALPNSNYQLNVKYTVRNT 151
           D +I + + L+  PN+++Q+N  + ++ +
Sbjct: 674 DSRIKTTEKLSTDPNTHFQVNQSHGIKRS 702


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 104 VVRLVS-LVIIFFDLFQPFNVSY*TYCGYQLTDW 6
           V++++S +VI+FF  + PF+     Y   Q +D+
Sbjct: 268 VIKMLSAVVILFFICWAPFHTQRLLYVYAQESDY 301


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 508 VYSTKNS*HLHHKAHNEEHSR 570
           VYS+ NS   H   ++ +HS+
Sbjct: 41  VYSSLNSLRNHKSIYHRQHSK 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,115
Number of Sequences: 438
Number of extensions: 3446
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)