Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d14r
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23540.1 68414.m02960 protein kinase family protein contains ...    30   1.4  
At4g14400.3 68417.m02222 ankyrin repeat family protein contains ...    29   1.9  
At4g14400.2 68417.m02221 ankyrin repeat family protein contains ...    29   1.9  
At4g14400.1 68417.m02220 ankyrin repeat family protein contains ...    29   1.9  
At4g14390.1 68417.m02219 ankyrin repeat family protein contains ...    28   4.3  
At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR ...    28   4.3  
At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase, p...    28   5.7  
At2g32970.1 68415.m04041 expressed protein                             28   5.7  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    27   7.5  
At4g05040.2 68417.m00741 ankyrin repeat family protein contains ...    27   10.0 
At4g05040.1 68417.m00740 ankyrin repeat family protein contains ...    27   10.0 
At1g51460.1 68414.m05792 ABC transporter family protein similar ...    27   10.0 

>At1g23540.1 68414.m02960 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 3   FPICQLISTVSLIRNIKRLKQIEKYNHKTH*PH 101
           F I  LI  V L+R  K+ + I+ YNH  + PH
Sbjct: 255 FAIMALIGVVFLVRR-KKKRNIDSYNHSQYLPH 286


>At4g14400.3 68417.m02222 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 230 VCFQNGSFPLHSFSETQH 283
           VC Q+GSFP+HS ++ +H
Sbjct: 259 VCDQDGSFPIHSAAKNEH 276


>At4g14400.2 68417.m02221 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 604

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 230 VCFQNGSFPLHSFSETQH 283
           VC Q+GSFP+HS ++ +H
Sbjct: 259 VCDQDGSFPIHSAAKNEH 276


>At4g14400.1 68417.m02220 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 670

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +2

Query: 230 VCFQNGSFPLHSFSETQH 283
           VC Q+GSFP+HS ++ +H
Sbjct: 325 VCDQDGSFPIHSAAKNEH 342


>At4g14390.1 68417.m02219 ankyrin repeat family protein contains
           Pfam profile: PF00023 ankyrin repeat
          Length = 694

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 230 VCFQNGSFPLHSFSETQHK 286
           VC Q+GSFP+H+ +E  H+
Sbjct: 354 VCDQDGSFPIHTAAEKGHE 372


>At1g51480.1 68414.m05794 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 941

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = +3

Query: 183 KVVC--KCS---ALLLPWRSRCVFKMALFHFIP---FRKHNTNMPHNRLPVSINLLNSMQ 338
           K+ C  KCS    LLLP+       +  F F+P       +TNM    LP  I+ L S+Q
Sbjct: 614 KISCSSKCSNLSTLLLPYNKLVNISVGFFLFMPKLVVLDLSTNMSLIELPEEISNLCSLQ 673

Query: 339 YL 344
           YL
Sbjct: 674 YL 675


>At5g07130.1 68418.m00813 laccase, putative / diphenol oxidase,
           putative similar to laccase [Populus balsamifera subsp.
           trichocarpa][GI:3805960]
          Length = 484

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -1

Query: 296 MRHICVVFPKRNEVEKSHFENTPT 225
           + ++  VFPK+N + +++++ TPT
Sbjct: 304 INNVSFVFPKQNSIMQAYYQGTPT 327


>At2g32970.1 68415.m04041 expressed protein
          Length = 577

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -1

Query: 140 PYI*HLADNYYLVVRLVSLVIIFFDLFQPFNVSY*T---YCGYQLTDW 6
           P++ H A   Y+++ ++++VI F+DL++   V   T    CG  L DW
Sbjct: 275 PWMCHFARALYVMISVITVVIGFYDLYKNVPVLKATASRLCG-PLFDW 321


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 193  VNAVHYYYPGGVGVFSKWLFSTS 261
            +N  HYY+   + V SK LFST+
Sbjct: 1649 INPEHYYFTVTIPVLSKMLFSTA 1671


>At4g05040.2 68417.m00741 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 572

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 230 VCFQNGSFPLHSFSETQH 283
           VC ++GSFP+H+ +E  H
Sbjct: 336 VCDEDGSFPIHTAAENGH 353


>At4g05040.1 68417.m00740 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 572

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 230 VCFQNGSFPLHSFSETQH 283
           VC ++GSFP+H+ +E  H
Sbjct: 336 VCDEDGSFPIHTAAENGH 353


>At1g51460.1 68414.m05792 ABC transporter family protein similar to
           SP|Q9UNQ0 ATP-binding cassette, sub-family G, member 2
           (Placenta-specific ATP- binding cassette transporter)
           (Breast cancer resistance protein) {Homo sapiens};
           contains Pfam profile PF00005: ABC transporter
          Length = 678

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 286 FVLCFRKGMKWKRAILKTHRLLQGSSSALH-LHTTLNTIPPL 164
           F+ C         A L   R +  SS +LH LH T NT+ PL
Sbjct: 262 FLRCVNSDFDNVTAALVESRRINDSSFSLHQLHETTNTLDPL 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,112,755
Number of Sequences: 28952
Number of extensions: 230970
Number of successful extensions: 526
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)