Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d14f
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 269 1e-72
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 245 3e-65
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 189 2e-48
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 6e-38
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 85 6e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 61 8e-10
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 0.55
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 31 0.72
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 29 2.2
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14) 27 8.9
SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6) 27 8.9
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 269 bits (659), Expect = 1e-72
Identities = 123/155 (79%), Positives = 139/155 (89%)
Frame = +2
Query: 140 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 319
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KTGM+LLCGEITS A
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSNA 88
Query: 320 NVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEEVGAGDQ 499
VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH R +E+VGAGDQ
Sbjct: 89 VVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVGREEEDVGAGDQ 148
Query: 500 GLMFGYATDETEECMPLTVVLAHKLNQKIAELRRN 604
GLMFGYATDETEE MPLTVVLAHK+NQK+AE RR+
Sbjct: 149 GLMFGYATDETEELMPLTVVLAHKMNQKLAEYRRD 183
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 245 bits (599), Expect = 3e-65
Identities = 116/160 (72%), Positives = 129/160 (80%)
Frame = +2
Query: 122 YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCG 301
Y D FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKTG+VLL G
Sbjct: 44 YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGLVLLFG 103
Query: 302 EITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHENRNDEE 481
EITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA VH NR D+E
Sbjct: 104 EITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLNRRDDE 163
Query: 482 VGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRR 601
+GAGDQGLMFGYATDETEE MPLT VLAHKL ++AE R+
Sbjct: 164 IGAGDQGLMFGYATDETEELMPLTTVLAHKLCARLAECRK 203
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 189 bits (460), Expect = 2e-48
Identities = 83/113 (73%), Positives = 103/113 (91%)
Frame = +2
Query: 266 TITKTGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNI 445
++ KTGM+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+I
Sbjct: 2 SVAKTGMIVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDI 61
Query: 446 AAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRN 604
A GVH R+DE++GAGDQGLMFGYATDET+E MPLTVVLAH LN+++A+ RRN
Sbjct: 62 AQGVHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRLADCRRN 114
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 154 bits (373), Expect = 6e-38
Identities = 68/82 (82%), Positives = 77/82 (93%)
Frame = +2
Query: 140 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMVLLCGEITSKA 319
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KTGM+++CGEITS A
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGMIVVCGEITSLA 68
Query: 320 NVDYQKVVRETVKHIGYDDSSK 385
NVDYQKVVR+T+K IGYDDSSK
Sbjct: 69 NVDYQKVVRDTIKQIGYDDSSK 90
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 84.6 bits (200), Expect = 6e-17
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +2
Query: 140 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 262
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/43 (62%), Positives = 34/43 (79%)
Frame = +2
Query: 476 EEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIAELRRN 604
E+ GAGDQGLMFGYAT+ET+ MP V AH+L ++ +ELRRN
Sbjct: 8 EDQGAGDQGLMFGYATNETDSLMPAPVYYAHRLVERQSELRRN 50
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 24 RGTVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 158
RG VW ++GL+ N E K + T++ PT+ V++W + + F +H
Sbjct: 416 RGQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 461
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 24 RGTVWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 158
RG VW ++GL+ N E K + T++ PT+ V++W + + F +H
Sbjct: 70 RGQVWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 115
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 299 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 400
GEITS N+D +K+ + K I YD G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 521 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 423
L N T+ P + PQ P H SHA + ++I G+
Sbjct: 99 LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 267 VSHATFASGS*FRCASRIASLIWSHILSG 181
+S + A + FRC+ R S++W H+ +G
Sbjct: 287 ISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 71 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 247
MP G +K N + D D +L +S+ + D++C + I AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 71 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 247
MP + G +K N + D D +L S+ + D++C + I AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300
>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
Length = 334
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 482 LPRHFCSHAPQQQCLVIVGLVRASHCMSCNQSL-WTNHHN 366
L R FC +C+ I+G R S+ + W HH+
Sbjct: 106 LSRLFCERLDSNECVFIIGAQRFSNYTGYAHTFKWAGHHD 145
>SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6)
Length = 766
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 407 SVMLALDQQSPNIAAG-VHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 583
S +AL ++S + AAG + ++ G +M D+ EC P +++ A LN+K
Sbjct: 613 SQAVALLRRSVHAAAGRLDDSHVMSSRGTHRVEIMLRLLPDDFAECSPDSLMFARALNEK 672
Query: 584 IAEL 595
I +L
Sbjct: 673 IYKL 676
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,010,570
Number of Sequences: 59808
Number of extensions: 476334
Number of successful extensions: 1308
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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