Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d13r
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    29   0.81 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.1  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   4.3  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    26   5.7  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   7.5  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    25   9.9  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 119 EQFFVSILVSSHNQAISLNDIFV 51
           E+FF S+L SS  Q ISL D +V
Sbjct: 222 EEFFSSVLSSSAQQLISLRDFYV 244


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -1

Query: 272 LQISM*PMICSWILNYEHIKMLDELCVNAARFKMFDNVALIVFLLSMYCLVEQFFV 105
           L+I M  ++  W+  +    ++  L  N   F M + V  I F  S+ CL+ + +V
Sbjct: 97  LRIPMASLLMFWLFKFLASALVLLLRPNYTMFPMLNVVPSITFFCSLVCLLAEIYV 152


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 452 VEENKENGVGKDDENLFPLVVKDKSL 375
           VEEN  N + +   N+FP++ KD  L
Sbjct: 416 VEENNPNNIPEGILNVFPILSKDSHL 441


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 91  DTNIDTKNCSTKQYIDNRKTIKATLSNILKR 183
           D+N    N STK  I+ RK    T+S++L +
Sbjct: 204 DSNFAFHNSSTKTTINRRKKAIGTISSLLSK 234


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 464 GNNPVEENKENGVGKDDENLFPLVVKDKSL 375
           G  P  E  E G GK+ ++LFP+    + L
Sbjct: 17  GERPTNEVYEYGKGKNVQHLFPITPMQRPL 46


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 64  FNDIAWLWLDTNIDTKNCSTKQYIDNRKTIKATLSNIL 177
           FN++    LD  +DT + +   + D  K  ++ L+N++
Sbjct: 84  FNNLFAFLLDQKVDTMDIAVSWFADYAKDNQSALANLI 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,701
Number of Sequences: 5004
Number of extensions: 40835
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)