Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d13r
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z32683-14|CAN86606.1|  102|Caenorhabditis elegans Hypothetical p...    27   9.2  

>Z82287-3|CAB05313.3|  772|Caenorhabditis elegans Hypothetical
           protein ZK550.3 protein.
          Length = 772

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 657 SQAPFDHVFCSGNYNTNQRRHNN 589
           S+A FDH F + + N  + RHNN
Sbjct: 317 SKAGFDHDFYNNSINIEELRHNN 339


>AF067936-3|AAC19216.2|  922|Caenorhabditis elegans Hypothetical
           protein C24G6.3 protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 40  SCSITKISFNDIAWLWLDTNIDTKNCSTKQYID 138
           SC ++  SF    +L++D  ++  +CS ++Y D
Sbjct: 229 SCLVSSPSFAPFCFLFIDEKLNDDDCSDEEYED 261


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 46  SITKISFNDIAWLWLDTNIDTKNCS-TKQYIDNRKTIKATLSNILKRAALTHN 201
           +I ++ F+   WL+  + +D+ NCS    YI          S I+ R  +  N
Sbjct: 31  NILRMFFHIFMWLFYLSEVDSDNCSFNVHYITKESLFPTECSQIIGRFRIDQN 83


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 46  SITKISFNDIAWLWLDTNIDTKNCS-TKQYIDNRKTIKATLSNILKRAALTHN 201
           +I ++ F+   WL+  + +D+ NCS    YI          S I+ R  +  N
Sbjct: 31  NILRMFFHIFMWLFYLSEVDSDNCSFNVHYITKESLFPTECSQIIGRFRIDQN 83


>Z32683-14|CAN86606.1|  102|Caenorhabditis elegans Hypothetical
           protein R07E5.10b protein.
          Length = 102

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 161 VALIVFLLSMYCLVEQFFVSILVSSHNQAISLNDIFVIL 45
           V LIV L SM+ L + FF  +L  S N A++ + I  ++
Sbjct: 37  VILIVPLASMFLLKQFFFEGLLGVSANDALTYSAIIAVV 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,543
Number of Sequences: 27780
Number of extensions: 231645
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)