Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d13f
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2XP18 Cluster: Polyprotein; n=35; Equine rhinitis A vi...    34   3.5  
UniRef50_A7SAV6 Cluster: Predicted protein; n=1; Nematostella ve...    33   8.0  
UniRef50_A5K585 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q2XP18 Cluster: Polyprotein; n=35; Equine rhinitis A
           virus|Rep: Polyprotein - Equine rhinitis A virus
          Length = 2248

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = -1

Query: 189 TNRMTVMKETLSFCCSTSNPEFFPCNTCTRLNSFRMIITLDSFRFNSNKYSSTSQMF 19
           TN + V K+T SFC  +  P F   NT      F+M ++L +   +    +S S  F
Sbjct: 560 TNFIDVAKQTYSFCSISGKPYFMVTNTSGDEPLFQMDVSLSAAELHGTYVASLSSFF 616


>UniRef50_A7SAV6 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 580

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
 Frame = +2

Query: 260 FDHVFCSGNYNTNQRRHNNYY--------RRSDYYRFNNYYYGC 367
           F +   +G YN+N   HNNY+        R + Y   NN+Y GC
Sbjct: 362 FHNNHSNGRYNSNHYGHNNYHNNHFNSHGRHNSYSSHNNHYNGC 405


>UniRef50_A5K585 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 584

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
 Frame = +2

Query: 29  DVLEYLLELNRKESRVIIIRNEFNRVQVL--HGKNSGLDVEQQNDSVSFITVILFVC--- 193
           D++ Y+     +E + I+ +   N +  +    KN+ L     N++V  I  +L+ C   
Sbjct: 28  DLIYYVRTNEIEEVKKILQQGNINSINDVKDENKNTLLHFACANNNVEMIRFLLYECAIG 87

Query: 194 ---FDVSVGR----AEESAHGRGGRSQAPFDHVFCSGNYNTNQRRHNNYYR--RSDY 337
               + S       A ++ H    +    FD++ CS  YNT +R+ N  Y   R D+
Sbjct: 88  HNQLNASGNSPLMWAIQNKHSEAVKEVLLFDYLLCSKEYNTVERKKNELYEHMRKDF 144


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,025,969
Number of Sequences: 1657284
Number of extensions: 8923720
Number of successful extensions: 32434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32147
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)