Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d13f
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.9  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   6.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   6.7  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   8.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 275 CSGNYNTNQRRHNNYYRRSD 334
           CSGN  +   +H   YR  D
Sbjct: 5   CSGNLGSMDIKHEMIYREDD 24


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 254 APFDHVFCSGNYNTNQRRHNNYYR 325
           +PFD V C  N    +R    Y R
Sbjct: 143 SPFDRVVCGPNGCPRRRGRQTYTR 166


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 254 APFDHVFCSGNYNTNQRRHNNYYR 325
           +PFD V C  N    +R    Y R
Sbjct: 202 SPFDRVVCGPNGCPRRRGRQTYTR 225


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 238 RWTISGTV*PRLLF 279
           R+T  GT+ PRL++
Sbjct: 234 RYTADGTISPRLIY 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,585
Number of Sequences: 336
Number of extensions: 2410
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)