Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d13f
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 32   0.36 
SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)                29   2.5  
SB_46613| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_16299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)                         29   4.4  

>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 277  TEDVVKRCLRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 152
            T  + K  + ++T+A+SR++   N N+  NK  D N  N+ V
Sbjct: 1235 TFTITKTPITTTTTALSRYVNNNNNNIHHNKNTDDNNNNSFV 1276



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 268  VVKRCLRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 152
            + K  + + T+A+SR++   N ++  NK  D N  N+ V
Sbjct: 1516 ITKTPMTTITTALSRYVNNNNNDIHHNKNTDDNNNNSFV 1554


>SB_40986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 262 KRCLRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 152
           K  + ++T+A+SR++   N N+  NK  D N  N+ V
Sbjct: 23  KTPMTTTTTALSRYVNNNNNNIHHNKNTDDNNNNSFV 59


>SB_49461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 253 LRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 152
           + ++T+A+SR++   N N+  NK  D N  N+ V
Sbjct: 1   MTTTTTALSRYVNNNNNNIHHNKNTDDNNNNSFV 34


>SB_42540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1471

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 268 VVKRCLRSSTSAVSRFLCPANANVETNKQNDSNERNTIV 152
           + K  + ++T+A+SR++   N ++  NK  D N  N+ V
Sbjct: 145 ITKTPMTTTTTALSRYVNNNNNDIHHNKNTDDNNNNSFV 183


>SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05)
          Length = 2293

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 212  RAEESAHGRGGRSQAPFDHVFCSGN-YNTNQRRHNNYYRRSDYYRFNNYYY 361
            +   + +G GG +    ++ +   N Y TN  + NNYY+   Y   N Y Y
Sbjct: 1406 QGNNNMYGYGGNNNVYMNNGYQGNNLYTTNSYQGNNYYQNKGYQ--NGYRY 1454


>SB_46613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 203 SVGRAEESAHGRGGRSQAPFDHVFCSGNYNTNQRRHNNYYRRSDYYRFNNYYYGCS 370
           S GR+ E+ H    R     +      N N N +R +N   + D    +N YY  S
Sbjct: 134 SYGRSHENLHADCNRKSKSLESCADLKNANNNDQRPSNPMFKEDLQNDSNTYYASS 189


>SB_16299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 317 SCCVYVDWCCSFQNRRRGQTVPEIVH 240
           SCCV+ ++   + NR+RG  +P  VH
Sbjct: 141 SCCVFCEFSPHYPNRKRGLFLPCKVH 166


>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
          Length = 459

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 420 TEPPVSEGNNPVEENKENGVGKDDENLFPLVVKDKSL 530
           TE    +GN+  ++NKE   GKDDE+    ++  K+L
Sbjct: 76  TEDDTDDGND--DDNKEGSSGKDDESENEKIIVPKAL 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,492,150
Number of Sequences: 59808
Number of extensions: 288246
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)