Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d12r
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.5  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    27   1.9  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.5  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.8  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 372  LPEPKAVYPDATPALPEDAEKKPPRLGSR 286
            +P P A+ P  TP LP  + + PP   +R
Sbjct: 1040 VPSPSALSPSVTPQLPPVSSRLPPVSATR 1068


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 171 MSDFYSNSKFYNWQHSIVSH*HVGGV 248
           M +FY +SK  +W+  IVS+ H+ G+
Sbjct: 515 MQNFYQDSKSNHWEAQIVSY-HISGL 539


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 647 KKRMILENVSTRVRQSLPVHWSSSGK*RRPAWLSLISTLTV 525
           K   ++ENVS     +  VHW  S +  RPA  +++ T TV
Sbjct: 719 KWEFLVENVSRIYHMAAEVHWMKSYQELRPA--NVLGTKTV 757


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 444 LNLP---RPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPE 322
           +NLP    P  GYF     + +  P P+  P A Y  A+  + E
Sbjct: 227 VNLPGAQEPNRGYFSPMHTYSSAVPGPISVPSAPYGRASSTIAE 270


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 579 FRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKL 442
           F K+K + +  F    NC  K   ++      K  GV  QC +EKL
Sbjct: 558 FEKLK-SWMPGFGDPKNCTGKRVDEHKINSLVKEFGVSLQCFVEKL 602


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 375 PLPEPKAVYPDATPALPEDAEKKPP 301
           P+P P ++ P A P+LP  A    P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLP 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,873
Number of Sequences: 5004
Number of extensions: 51766
Number of successful extensions: 160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)