Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d12r
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   3e-19
SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12)              30   1.6  
SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)                 30   1.6  
SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)                 30   2.1  
SB_2132| Best HMM Match : ERM (HMM E-Value=1.6)                        30   2.1  
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)                   29   3.6  
SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              28   8.3  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 41/86 (47%), Positives = 56/86 (65%)
 Frame = -3

Query: 693 GKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKS 514
           G+YC+     +M CR E  DPRKCI EGK VT C L FF+++K  C   F ++ NCLD +
Sbjct: 481 GQYCDKEFKTFMGCRYETKDPRKCIEEGKEVTRCALRFFKQLKSECNDTFTKHWNCLDHN 540

Query: 513 SGDYAFRHCRKTQGVFDQCMLEKLNL 436
           + +  F +CRKTQ  +D C+L+KL L
Sbjct: 541 NQE--FGYCRKTQKQYDACVLDKLGL 564


>SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12)
          Length = 379

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 651 RQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRK 481
           R+ EN  + C  E +  T   +E     K T L +    S+C  ++  D   +HC++
Sbjct: 243 RELENQAQNCKQEIEEATNKIIEAVLVRKNTLLKDLELVSDCTRQALDDRTMKHCKE 299


>SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)
          Length = 605

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 651 RQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRK 481
           R+ EN  + C  E +  T   +E     K T L +    S+C  ++  D   +HC++
Sbjct: 243 RELENQAQNCKQEIEEATNKIIEAVLVRKNTLLKDLELVSDCTRQALDDRTMKHCKE 299


>SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)
          Length = 458

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = -3

Query: 576 RKVKKTCLAEFNQYSNCL-DK---SSGDYAF 496
           +K++K CLAEF  + NC+ DK   S+GD AF
Sbjct: 55  KKLEKLCLAEFAAWFNCVSDKHADSAGDKAF 85


>SB_2132| Best HMM Match : ERM (HMM E-Value=1.6)
          Length = 689

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = -3

Query: 576 RKVKKTCLAEFNQYSNCL-DK---SSGDYAF 496
           +K++K CLAEF  + NC+ DK   S+GD AF
Sbjct: 97  KKLEKPCLAEFAAWFNCVSDKHADSAGDKAF 127


>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1013

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = -3

Query: 573 KVKKTCLAEFNQYSNCL-DK---SSGDYAF 496
           K++K CLAEF  + NC+ DK   S+GD AF
Sbjct: 508 KLEKPCLAEFAAWFNCVSDKHADSAGDKAF 537


>SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 510 GDYAFRHCRKTQGVFDQCMLEKLNLPRPGFGYFCEARVHDTKRPKPL 370
           GD   +  +     +D    +++N  RPG   +   R+  +K+PKPL
Sbjct: 117 GDQGAQGVKVNPLTYDNLTPQQINALRPGLKSYITQRIVVSKQPKPL 163


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 381 PKPLPEPKAVYPDATPALPEDAEKKPPRLGSRFY 280
           P P P P   YP + P+    +   PP + S  Y
Sbjct: 533 PSPYPYPAHYYPPSLPSYTRSSSYPPPSIDSSEY 566


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 435 PRPGFGYFCEARVHDTKRPKPLPEPKAVYPDATPALPEDAEKKPPRL 295
           P P   +  +A  H T+ P+  PEP    P  TP    +  +  P L
Sbjct: 347 PNPNV-HTTDAPKHTTEPPRTTPEPTTEPPQTTPEPTTEPSRTKPEL 392


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,942,887
Number of Sequences: 59808
Number of extensions: 395217
Number of successful extensions: 1143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)