Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d12r
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18800.2 68418.m02234 NADH-ubiquinone oxidoreductase 19 kDa s...    52   5e-07
At5g18800.1 68418.m02233 NADH-ubiquinone oxidoreductase 19 kDa s...    52   5e-07
At3g06310.1 68416.m00725 NADH-ubiquinone oxidoreductase 19 kDa s...    51   8e-07
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    29   2.2  
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s...    28   6.8  
At3g01450.1 68416.m00069 expressed protein                             28   6.8  

>At5g18800.2 68418.m02234 NADH-ubiquinone oxidoreductase 19 kDa
           subunit (NDUFA8) family protein contains Pfam profile:
           PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit
          Length = 106

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = -3

Query: 693 GKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKS 514
           G  C   N  ++ C++ + +P KC+++G+ VT C L   + + + C  E + Y  C+   
Sbjct: 26  GMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVLGLLKDLHQKCQKEMDDYVGCMYYY 85

Query: 513 SGDYAFRHCRKTQGVFDQ-CMLE 448
           + +  F  CRK Q  F++ C L+
Sbjct: 86  TNE--FDLCRKEQEAFEKVCPLK 106


>At5g18800.1 68418.m02233 NADH-ubiquinone oxidoreductase 19 kDa
           subunit (NDUFA8) family protein contains Pfam profile:
           PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit
          Length = 106

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = -3

Query: 693 GKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKS 514
           G  C   N  ++ C++ + +P KC+++G+ VT C L   + + + C  E + Y  C+   
Sbjct: 26  GMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVLGLLKDLHQKCQKEMDDYVGCMYYY 85

Query: 513 SGDYAFRHCRKTQGVFDQ-CMLE 448
           + +  F  CRK Q  F++ C L+
Sbjct: 86  TNE--FDLCRKEQEAFEKVCPLK 106


>At3g06310.1 68416.m00725 NADH-ubiquinone oxidoreductase 19 kDa
           subunit (NDUFA8) family protein contains Pfam profile
           PF05850: NADH-ubiquinone oxidoreductase 19 kDa subunit
           (NDUFA8); similar to NADH-ubiquinone oxidoreductase 19
           kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-19KD)
           (CI-19KD) (Complex I-PGIV) (CI-PGIV) (Swiss-Prot:P51970)
           [Homo sapiens]
          Length = 108

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -3

Query: 693 GKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKS 514
           G  C   N  ++ C++ + +P KC+ +G+ VT C L   + + + C  E + Y  C+   
Sbjct: 28  GIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGLLKDLHQRCPKEMDAYVGCMYYY 87

Query: 513 SGDYAFRHCRKTQGVFDQ-CMLE 448
           + +  F  CRK Q  F++ C L+
Sbjct: 88  TNE--FELCRKEQEAFEKVCPLK 108


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 381 PKPLPEPKAVYPDATPALPEDAEKKP 304
           P P P+PK V P A P  P   + KP
Sbjct: 54  PPPKPQPKPVPPPACPPTPPKPQPKP 79



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 384 RPKPLPEPKAVYPDATPALPEDAEKKPP 301
           +P P PEPK   P A   +P  +  KPP
Sbjct: 78  KPAPPPEPKPAPPPAPKPVPCPSPPKPP 105


>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
           subunit, putative similar to component of chloroplast
           outer membrane translocon Toc64 [Pisum sativum]
           GI:7453538; contains Pfam profiles PF01425: Amidase,
           PF00515: TPR Domain
          Length = 603

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 208 GNTASSRTSMSVAYSPYLALFRHPVETGAEPWW 306
           G + +S +++    S  LA+ RH  +T  E WW
Sbjct: 304 GKSQNSASTLRALSSVMLAIQRHEFKTNHEEWW 336


>At3g01450.1 68416.m00069 expressed protein
          Length = 326

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 115 FTSYNAHHIAERDYLKHQRCQISTQIVNFIIGNTASSRTSMSVAYSPYLAL 267
           F+SYN H I + D L  Q    S+Q   F+      +  +M+   SP L L
Sbjct: 152 FSSYNDHTIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTAHVSPALLL 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,684
Number of Sequences: 28952
Number of extensions: 275242
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)