Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d12f
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   3.7  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   3.7  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   6.4  

>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 94  KLLV*YNLNKTMV-VTADV-YLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYML 267
           KL + YN+  T +  T+D+ +  +D  LT    N        G F +  Y E +N + +L
Sbjct: 415 KLSLDYNVQMTSINATSDMLFAADDRRLTAFTFNSQEDIAKFGEFDISTYAEGLNFKSLL 474


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 275 KKRMILENVSTRVRQSLPVHWSSSGK*RRPAWLSLISTLTV 397
           K   ++ENVS     +  VHW  S +  RPA  +++ T TV
Sbjct: 719 KWEFLVENVSRIYHMAAEVHWMKSYQELRPA--NVLGTKTV 757


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 343 FRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKL 480
           F K+K + +  F    NC  K   ++      K  GV  QC +EKL
Sbjct: 558 FEKLK-SWMPGFGDPKNCTGKRVDEHKINSLVKEFGVSLQCFVEKL 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,995
Number of Sequences: 5004
Number of extensions: 49428
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)