Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d12f
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0669 + 10295160-10295356,10296003-10296045                       39   0.003
05_01_0206 + 1487034-1489430                                           29   3.8  
02_01_0503 + 3669758-3670059,3670351-3670870                           28   5.0  
05_03_0039 - 7621613-7622695                                           23   5.9  
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207           28   6.6  
02_05_0418 + 28807763-28807777,28809216-28809242,28809588-288096...    28   6.6  
05_03_0040 - 7646525-7647775                                           24   9.8  

>03_02_0669 + 10295160-10295356,10296003-10296045
          Length = 79

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 193 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLE 339
           + S L A S H+   C   N  ++ C++++ +P+KC+ +G+ V  C  +
Sbjct: 17  TSSVLMAASKHIAVRCRPENVAFLNCKKKDPNPQKCLEKGRQVKRCVFD 65


>05_01_0206 + 1487034-1489430
          Length = 798

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
 Frame = +1

Query: 487 PRPGFGYFCEA-------RVHDTKRPKPLPEPKAVYPDATPA 591
           P P  G FC+        R  DT  P P P P+   P ATP+
Sbjct: 310 PLPDSGRFCKVSGDVICRRFCDTSPPPPPPSPRTPSPPATPS 351


>02_01_0503 + 3669758-3670059,3670351-3670870
          Length = 273

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 593 RAGVASG*TAFGSGRGFGLLVSWT-RASQKYPKPGRGKFSFSS 468
           +AG +SG  AFGS +  G   S T +  ++  +PGR  FS  S
Sbjct: 58  KAGSSSGADAFGSSQPVGSFSSRTKKMDEERRRPGRDPFSCRS 100


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 23.4 bits (48), Expect(2) = 5.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 487 PRPGFGYFCEARVHDTKRPKPLPEPK 564
           P+P      E + H   +P P+PEP+
Sbjct: 286 PKPKPDPKLEPKPHPEPKPHPMPEPE 311



 Score = 23.0 bits (47), Expect(2) = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
 Frame = +1

Query: 541 PKPLPEPK---AVYPDATPAL 594
           PKP PEPK     YP+  P L
Sbjct: 312 PKPKPEPKPEPKPYPEPKPKL 332


>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
          Length = 153

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 232 KYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKS 408
           K C+T+ ++Y  C     +PR C     A   C  +   ++ K C    +  S CL ++
Sbjct: 92  KKCKTLIDKYEECSNPPKEPRLCPAHELAFEKCLQKNVGEI-KVCQFWMDMMSKCLRRN 149


>02_05_0418 +
           28807763-28807777,28809216-28809242,28809588-28809621,
           28809909-28810154,28810518-28810948,28812759-28813418
          Length = 470

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 538 RPKPLPEPKAVYPDAT 585
           +P+P PEPKA Y +AT
Sbjct: 395 KPEPEPEPKAAYDEAT 410


>05_03_0040 - 7646525-7647775
          Length = 416

 Score = 24.2 bits (50), Expect(2) = 9.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 541 PKPLPEPKAVYPDATP 588
           PKP PEPK  YP+  P
Sbjct: 230 PKPKPEPKP-YPEPKP 244



 Score = 21.4 bits (43), Expect(2) = 9.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 538 RPKPLPEPK 564
           +PKP PEPK
Sbjct: 223 KPKPKPEPK 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,628,941
Number of Sequences: 37544
Number of extensions: 319557
Number of successful extensions: 894
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)