Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d12f
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 3e-24
SB_41572| Best HMM Match : MFS_1 (HMM E-Value=0.082) 31 0.71
SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12) 30 1.2
SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17) 30 1.2
SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92) 30 1.6
SB_2132| Best HMM Match : ERM (HMM E-Value=1.6) 30 1.6
SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09) 29 2.2
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17) 29 2.9
SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 108 bits (260), Expect = 3e-24
Identities = 49/107 (45%), Positives = 68/107 (63%)
Frame = +1
Query: 166 ELTVQEVNLSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFF 345
+L +EV L+ S L + HLG+YC+ +M CR E DPRKCI EGK VT C L FF
Sbjct: 460 DLETEEVELTSSVLMGAAHHLGQYCDKEFKTFMGCRYETKDPRKCIEEGKEVTRCALRFF 519
Query: 346 RKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNL 486
+++K C F ++ NCLD ++ + F +CRKTQ +D C+L+KL L
Sbjct: 520 KQLKSECNDTFTKHWNCLDHNNQE--FGYCRKTQKQYDACVLDKLGL 564
>SB_41572| Best HMM Match : MFS_1 (HMM E-Value=0.082)
Length = 460
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 172 TVQEVNLSGSTLYAGSFHLGKYCETI 249
TV + LSG +YA FHL K+CE +
Sbjct: 226 TVVSITLSGVGIYAPFFHLVKHCEEV 251
>SB_45821| Best HMM Match : zf-B_box (HMM E-Value=1.1e-12)
Length = 379
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 271 RQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRK 441
R+ EN + C E + T +E K T L + S+C ++ D +HC++
Sbjct: 243 RELENQAQNCKQEIEEATNKIIEAVLVRKNTLLKDLELVSDCTRQALDDRTMKHCKE 299
>SB_32308| Best HMM Match : MIF4G (HMM E-Value=1.5e-17)
Length = 605
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 271 RQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRK 441
R+ EN + C E + T +E K T L + S+C ++ D +HC++
Sbjct: 243 RELENQAQNCKQEIEEATNKIIEAVLVRKNTLLKDLELVSDCTRQALDDRTMKHCKE 299
>SB_38703| Best HMM Match : MMR_HSR1 (HMM E-Value=0.92)
Length = 458
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Frame = +1
Query: 346 RKVKKTCLAEFNQYSNCL-DK---SSGDYAF 426
+K++K CLAEF + NC+ DK S+GD AF
Sbjct: 55 KKLEKLCLAEFAAWFNCVSDKHADSAGDKAF 85
>SB_2132| Best HMM Match : ERM (HMM E-Value=1.6)
Length = 689
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
Frame = +1
Query: 346 RKVKKTCLAEFNQYSNCL-DK---SSGDYAF 426
+K++K CLAEF + NC+ DK S+GD AF
Sbjct: 97 KKLEKPCLAEFAAWFNCVSDKHADSAGDKAF 127
>SB_6059| Best HMM Match : 7tm_2 (HMM E-Value=6.5e-09)
Length = 1069
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 197 DQLYTLVPFIWENIVKPLTMSTCCVVKKRMILENVSTRVRQSL 325
D+ TLV F+W +I+ T K R L + S ++RQSL
Sbjct: 849 DKTITLVSFMWTSIIAYDTWKAFSSRKNRAALGSSSKKLRQSL 891
>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1013
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Frame = +1
Query: 349 KVKKTCLAEFNQYSNCL-DK---SSGDYAF 426
K++K CLAEF + NC+ DK S+GD AF
Sbjct: 508 KLEKPCLAEFAAWFNCVSDKHADSAGDKAF 537
>SB_56576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 412 GDYAFRHCRKTQGVFDQCMLEKLNLPRPGFGYFCEARVHDTKRPKPL 552
GD + + +D +++N RPG + R+ +K+PKPL
Sbjct: 117 GDQGAQGVKVNPLTYDNLTPQQINALRPGLKSYITQRIVVSKQPKPL 163
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 79 ILINSKLLV*YNLNKTMVVTADVYLPEDSELTVQEVNLSGS-TLYAGSFHLGKYCETINN 255
+ I K+L LN+ + A+ LPE S+ +QE L + LYA L K +T+N
Sbjct: 2920 LTIAGKILARIMLNRLIPSVAEKNLPE-SQRQIQEKCLEQNMNLYAVFIDLTKAFDTVNR 2978
Query: 256 E 258
E
Sbjct: 2979 E 2979
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,890,483
Number of Sequences: 59808
Number of extensions: 368728
Number of successful extensions: 956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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