Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d12f
         (599 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001016-1|AAH01016.1|  172|Homo sapiens NADH dehydrogenase (ubi...   137   3e-32
AL162423-2|CAH73980.1|  172|Homo sapiens NADH dehydrogenase (ubi...   137   3e-32
AF044953-1|AAD42056.1|  172|Homo sapiens NADH:ubiquinone oxidore...   137   3e-32
AK130065-1|BAC85289.1|  260|Homo sapiens protein ( Homo sapiens ...    30   7.1  

>BC001016-1|AAH01016.1|  172|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, 8, 19kDa protein.
          Length = 172

 Score =  137 bits (331), Expect = 3e-32
 Identities = 64/138 (46%), Positives = 84/138 (60%)
 Frame = +1

Query: 145 VYLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVT 324
           V LP   EL V EV +S + L A + H G  C+  N E+MLCR EE DPR+C+ EGK V 
Sbjct: 5   VELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVN 64

Query: 325 ACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNLPRPGFG 504
            C L+FFR++K+ C   F +Y  C+D  +G   FRHCRK Q  FD+C+L+KL   RP  G
Sbjct: 65  KCALDFFRQIKRHCAEPFTEYWTCID-YTGQQLFRHCRKQQAKFDECVLDKLGWVRPDLG 123

Query: 505 YFCEARVHDTKRPKPLPE 558
               ++V   K  +PLPE
Sbjct: 124 EL--SKVTKVKTDRPLPE 139


>AL162423-2|CAH73980.1|  172|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, 8, 19kDa protein.
          Length = 172

 Score =  137 bits (331), Expect = 3e-32
 Identities = 64/138 (46%), Positives = 84/138 (60%)
 Frame = +1

Query: 145 VYLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVT 324
           V LP   EL V EV +S + L A + H G  C+  N E+MLCR EE DPR+C+ EGK V 
Sbjct: 5   VELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVN 64

Query: 325 ACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNLPRPGFG 504
            C L+FFR++K+ C   F +Y  C+D  +G   FRHCRK Q  FD+C+L+KL   RP  G
Sbjct: 65  KCALDFFRQIKRHCAEPFTEYWTCID-YTGQQLFRHCRKQQAKFDECVLDKLGWVRPDLG 123

Query: 505 YFCEARVHDTKRPKPLPE 558
               ++V   K  +PLPE
Sbjct: 124 EL--SKVTKVKTDRPLPE 139


>AF044953-1|AAD42056.1|  172|Homo sapiens NADH:ubiquinone
           oxidoreductase PGIV subunit protein.
          Length = 172

 Score =  137 bits (331), Expect = 3e-32
 Identities = 64/138 (46%), Positives = 84/138 (60%)
 Frame = +1

Query: 145 VYLPEDSELTVQEVNLSGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVT 324
           V LP   EL V EV +S + L A + H G  C+  N E+MLCR EE DPR+C+ EGK V 
Sbjct: 5   VELPTLEELKVDEVKISSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVN 64

Query: 325 ACTLEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQCMLEKLNLPRPGFG 504
            C L+FFR++K+ C   F +Y  C+D  +G   FRHCRK Q  FD+C+L+KL   RP  G
Sbjct: 65  KCALDFFRQIKRHCAEPFTEYWTCID-YTGQQLFRHCRKQQAKFDECVLDKLGWVRPDLG 123

Query: 505 YFCEARVHDTKRPKPLPE 558
               ++V   K  +PLPE
Sbjct: 124 EL--SKVTKVKTDRPLPE 139


>AK130065-1|BAC85289.1|  260|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26555 fis, clone LNF01917. ).
          Length = 260

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -2

Query: 115 SCITQAILN*LIFCRNKYD---NSFHKISGRNLS 23
           +CI + +++ L FC + YD   N  H+ISGR LS
Sbjct: 22  TCIEEFVIHALAFCESLYDPYRNWRHRISGRILS 55


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,166,529
Number of Sequences: 237096
Number of extensions: 1786839
Number of successful extensions: 4768
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4765
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)