Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d12f
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.3  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   9.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 589 LAWRPGRQPSAPVEASVSWYHGLE 518
           ++W P  QP  P++    W   LE
Sbjct: 431 ISWNPLMQPKQPIKLFEQWKSILE 454


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 520 RVHDTKRPKPLPEPKAVYP 576
           +VH TK PKP  + K   P
Sbjct: 244 KVHATKPPKPQTKTKPTSP 262


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +1

Query: 334 LEFFRKVKKTCLAEFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ 462
           ++F  +V + C   FN     + +    YA  H +  Q  F+Q
Sbjct: 523 IDFKIEVTEDCNKSFNDLLTQVAELDQIYADTHAKLVQAAFEQ 565


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 17  LSRQISSTDFVEGIIIF 67
           LSRQ   TDF++ + IF
Sbjct: 205 LSRQAEYTDFLKSVPIF 221


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/59 (18%), Positives = 23/59 (38%)
 Frame = +1

Query: 229 GKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLAEFNQYSNCLDK 405
           G + E +  E      +EN+  K I E  A++   +         C A++      +++
Sbjct: 77  GNFNEVVVREIAEIYLDENEVNKLITECSAISDADIHLKSSKLIKCFAKYKTLKEIMNE 135


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 409 SGDYAFRHCRKTQGVF 456
           S DY F  CR   G F
Sbjct: 288 SSDYGFTECRCDPGYF 303


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 61  DNSFHKISGRNLSRKTTKF 5
           D + HK+ GR  S K +KF
Sbjct: 359 DLAAHKMHGRGRSGKKSKF 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,694
Number of Sequences: 438
Number of extensions: 3504
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)