Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d12f
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18800.2 68418.m02234 NADH-ubiquinone oxidoreductase 19 kDa s... 58 4e-09
At5g18800.1 68418.m02233 NADH-ubiquinone oxidoreductase 19 kDa s... 58 4e-09
At3g06310.1 68416.m00725 NADH-ubiquinone oxidoreductase 19 kDa s... 57 8e-09
At5g28295.1 68418.m03435 hypothetical protein 29 3.1
At3g24620.1 68416.m03092 expressed protein contains Pfam profile... 28 5.4
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 27 9.5
At1g02660.1 68414.m00216 lipase class 3 family protein contains ... 27 9.5
>At5g18800.2 68418.m02234 NADH-ubiquinone oxidoreductase 19 kDa
subunit (NDUFA8) family protein contains Pfam profile:
PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit
Length = 106
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +1
Query: 193 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLA 372
+ + L A + H+G C N ++ C++ + +P KC+++G+ VT C L + + + C
Sbjct: 14 TSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVLGLLKDLHQKCQK 73
Query: 373 EFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ-CMLE 474
E + Y C+ + + F CRK Q F++ C L+
Sbjct: 74 EMDDYVGCMYYYTNE--FDLCRKEQEAFEKVCPLK 106
>At5g18800.1 68418.m02233 NADH-ubiquinone oxidoreductase 19 kDa
subunit (NDUFA8) family protein contains Pfam profile:
PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit
Length = 106
Score = 58.0 bits (134), Expect = 4e-09
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +1
Query: 193 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLA 372
+ + L A + H+G C N ++ C++ + +P KC+++G+ VT C L + + + C
Sbjct: 14 TSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCVLGLLKDLHQKCQK 73
Query: 373 EFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ-CMLE 474
E + Y C+ + + F CRK Q F++ C L+
Sbjct: 74 EMDDYVGCMYYYTNE--FDLCRKEQEAFEKVCPLK 106
>At3g06310.1 68416.m00725 NADH-ubiquinone oxidoreductase 19 kDa
subunit (NDUFA8) family protein contains Pfam profile
PF05850: NADH-ubiquinone oxidoreductase 19 kDa subunit
(NDUFA8); similar to NADH-ubiquinone oxidoreductase 19
kDa subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-19KD)
(CI-19KD) (Complex I-PGIV) (CI-PGIV) (Swiss-Prot:P51970)
[Homo sapiens]
Length = 108
Score = 57.2 bits (132), Expect = 8e-09
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +1
Query: 193 SGSTLYAGSFHLGKYCETINNEYMLCRQEENDPRKCINEGKAVTACTLEFFRKVKKTCLA 372
+ + L A + H+G C N ++ C++ + +P KC+ +G+ VT C L + + + C
Sbjct: 16 TSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLGLLKDLHQRCPK 75
Query: 373 EFNQYSNCLDKSSGDYAFRHCRKTQGVFDQ-CMLE 474
E + Y C+ + + F CRK Q F++ C L+
Sbjct: 76 EMDAYVGCMYYYTNE--FELCRKEQEAFEKVCPLK 108
>At5g28295.1 68418.m03435 hypothetical protein
Length = 131
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 154 PEDSELTVQEVNLSGSTLYAGSFHLGK 234
P +++LTVQE L S ++ HLGK
Sbjct: 16 PNEAQLTVQEAGLLPSAIFGERKHLGK 42
>At3g24620.1 68416.m03092 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315); expression
supported by MPSS
Length = 523
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 125 QWW*PPTSIYPKIQS*PSKRSIYLDQ 202
+WW PP + P S PS+R +Y +
Sbjct: 233 KWWLPPVKVPPGGLSEPSRRMLYFQK 258
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 520 RVHDTKRPKPLPEPKAVYPDA-TPALP 597
R + + +P+PLP PK P TP++P
Sbjct: 29 RCNPSPKPRPLPNPKVPSPKVPTPSVP 55
>At1g02660.1 68414.m00216 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 713
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = -1
Query: 599 SGRAGVASG*TAFGSGRGFGLLVSWTRASQKYPKPGRGKFSFS 471
SG GV TA G+G G G +V RA+ P RG F FS
Sbjct: 8 SGLHGVIPAITAVGNG-GCGGVVE-VRATASAPSQKRGPFGFS 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,071
Number of Sequences: 28952
Number of extensions: 260843
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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