Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d11r
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    38   0.002
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.46 
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    29   0.81 
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    28   1.4  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    27   1.9  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    27   1.9  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    27   1.9  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    27   1.9  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   1.9  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   4.3  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   4.3  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   4.3  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   7.6  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   7.6  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    25   10.0 
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    25   10.0 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   10.0 

>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 26/101 (25%), Positives = 45/101 (44%)
 Frame = -2

Query: 404 IKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIY 225
           I  L  ++K  W  L++EEKK  Y  +F +      +   +    V W  V       + 
Sbjct: 55  ITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQ--KTVFWGTVAGLTIGVVL 112

Query: 224 MAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 102
             +     +P P +++ E Q+   + M + K+NPI G AS+
Sbjct: 113 FGLIRTQAAPSPRTMTREWQEKSNEYMKENKINPISGEASE 153


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 631 SSPILPAKWPII*CAGRSSMLSVFLSAPGLDPLETLNLPRLV 506
           S+ +LP+  PI+   GRSS LSV       D   TLN P  +
Sbjct: 431 SATVLPSSTPILLPRGRSSTLSVNKKQFNADDGSTLNSPNSI 472


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 621 IGLELYEKSHSPTLAKLD 674
           IG ++Y++SH P+L+KLD
Sbjct: 533 IGYKIYDRSHIPSLSKLD 550


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 437 PAIRFREDTPDIKALREKEKGDWRKLTLEEK 345
           P   FR +  + K  RE++K +W+K   E+K
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKKAREEDK 140



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 419 EDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWK 276
           ED  + K  RE++K +W+K   E+K    +A   +   E++    EW+
Sbjct: 149 EDKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 419 EDTPDIKALREKEKGDWRKLTLEEK 345
           ED  + K  RE++K +W+K   E+K
Sbjct: 127 EDKAEWKKAREEDKAEWKKAREEDK 151



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 419 EDTPDIKALREKEKGDWRKLTLEEK 345
           ED  + K  RE++K +W+K   E+K
Sbjct: 138 EDKAEWKKAREEDKAEWKKAREEDK 162


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = +2

Query: 14  TISSLHYNPEVFTRQCSIKFTSSGCFRSPTWRQVHRWDSP*GPTFS-GAEPSASL--HSM 184
           T  S H N E+ +    +   SS  F SP    +HR  SP  P  S G E    L   S+
Sbjct: 79  TSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSSLHR-SSPKRPHDSLGEESPGKLLRTSV 137

Query: 185 SQE*DCTQRLSWPCRSKQPK 244
            QE D  + +  P + K  K
Sbjct: 138 KQEPDSEEEIDSPTKKKSFK 157


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 621 IGLELYEKSHSPTLAKLD 674
           IG ++Y++SH P+L KLD
Sbjct: 529 IGYKIYDRSHIPSLDKLD 546


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 621 IGLELYEKSHSPTLAKLD 674
           IG ++Y++SH P+L KLD
Sbjct: 529 IGYKIYDRSHIPSLDKLD 546


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 621 IGLELYEKSHSPTLAKLD 674
           IG ++Y++SH P+L KLD
Sbjct: 529 IGYKIYDRSHIPSLDKLD 546


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 51  LASAVSNLLPAVV-FVVPLGGKSIDGIHLKVQHSLELSL 164
           LA  V ++L  V   +VP G K I  IHLK   S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 443 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQW 538
           GSQ C  +W+   N  + THG    QV  +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -2

Query: 404 IKALREKEKGDWRK---LTLEEKKTLYR 330
           I+ALREK K    K   L LEEKKT Y+
Sbjct: 49  IEALREKAKEKKEKERILALEEKKTNYK 76


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 641 FVQFK-SNPSSKMANYLMRRALINAIRVPVCARAGSTGNTELAKIGDREWVGYGFN 477
           FV+ K +NP SK+ ++LMR A  ++I      R+     T+  +  +  W+    N
Sbjct: 46  FVRLKCTNPESKVPHFLMRMAKDSSISATSMFRSAFPKATQEEEDLEMRWIRDNLN 101


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 281 WKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLAS 105
           WK + G  L +S   + I   +   VY P+ D  +   Q A L+R+ +      + +AS
Sbjct: 79  WKQLEGETLEISRYHSQIIGQIASQVYKPLIDYYTSSPQTATLRRLAERLSTVAEEMAS 137


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 194 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 87
           +P  +  ERQ   ++ +L+   +P+DG  ++ DY N
Sbjct: 27  LPKIVLSERQFCDVELILNGGFSPLDGFMNQKDYLN 62


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 416 DTPDIKALREKEKGDWRKLTLEEKKTLYRA 327
           D P I + R+ E    RKL+ +EKKTL +A
Sbjct: 194 DNPTIHS-RQLESMAGRKLSTDEKKTLKKA 222


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 417 LTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSS 545
           +T  DGR   +  VY+ G  +  +  P  + N   F V  G S
Sbjct: 46  VTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFKVGPGRS 88


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 356 GSICANHP-FLFHGEP*CQGCPHGTGWQAGGSQACL 460
           G  C+  P ++   E   QGCP G+   AGG+  C+
Sbjct: 285 GDTCSGLPCYVDPRENGVQGCPEGSPIGAGGACFCV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,925
Number of Sequences: 5004
Number of extensions: 67683
Number of successful extensions: 182
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)