Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d11r
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)                   31   0.85 
SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)                    30   2.0  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.6  
SB_18948| Best HMM Match : ANF_receptor (HMM E-Value=7.2e-17)          29   3.4  
SB_12684| Best HMM Match : ANF_receptor (HMM E-Value=2e-05)            29   3.4  
SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4)                   29   4.5  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                28   6.0  
SB_54712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)                   28   7.9  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 27/80 (33%), Positives = 45/80 (56%)
 Frame = -2

Query: 443 PLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVG 264
           P+P  R +E   D++AL+ KEKG W  L+ E++  LY++ F +T  E +      K VVG
Sbjct: 26  PVPIAR-QEFGSDLEALKAKEKGPWTALSKEDRVALYQSQFPKTLQESKLGEPYAKKVVG 84

Query: 263 WALVLSSLAAWIYMAMKVFV 204
              VL SL+   +  ++ ++
Sbjct: 85  GVGVLISLSLAFFAFLRTYM 104


>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1102

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 362 ICANHPFLFHGEP*CQGCPHGTGWQAGGSQACLRSWAGR*NHSLPTHGHQSWQVQC 529
           IC +  FL      CQ CP GT  +A G  AC+    G+   +  T+      V C
Sbjct: 567 ICVSGKFLNTTTLSCQVCPKGTFQEANGKTACIPCTGGKITLNNATNSSSGCLVAC 622


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = -3

Query: 631 SSPILPAKWPII*CAGRSSMLSVF--LSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT* 458
           SSP+LP    ++  +  SS ++     SAP L+   T N          A+ S+ SPTT 
Sbjct: 671 SSPVLPTTTSVLTSSMESSSMATTSTTSAPSLESSMTTNSTTSTLAQAVAISSSVSPTTT 730

Query: 457 TGLTSPCLPSGSVRTPLTLRLSVK 386
           + LTS    S    T  T   S++
Sbjct: 731 SVLTSSMEFSSMATTSTTTTPSLE 754



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -3

Query: 631 SSPILPAKWPII*CAGRSSMLSVFL-SAPGLDPLETLNLPRLVTVSG*AMVSTASPTT*T 455
           SSP+LP    ++  +  SSM +    S P L+   T N          A+ S   PTT +
Sbjct: 519 SSPVLPTTTSVLTSSMESSMATTSTTSTPSLESSMTTNNTTSTLAEAVAISSLVLPTTTS 578

Query: 454 GLTSPCLPSGSVRTPLT 404
            LTS  + S S+ T  T
Sbjct: 579 VLTS-SMESSSMATTST 594



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = -3

Query: 631 SSPILPAKWPII*CAGRSSMLSVF--LSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT* 458
           SS +LP    ++  +  SS ++     S P L+   T N   L      A  S   PTT 
Sbjct: 418 SSSVLPTTTSVLTSSMESSSMATTSTTSTPSLESSMTSNNTTLTLAEAVATSSPVLPTTT 477

Query: 457 TGLTSPCLPSGSVRTPLT 404
           + LTS   PS    T  T
Sbjct: 478 SVLTSSMEPSSMATTSTT 495



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -3

Query: 631  SSPILPAKWPII*CAGRSSMLSVF--LSAPGLDPLETLNLPRLVTVSG*AMVSTASPTT* 458
            SSP+LP    ++  +  SS ++     S P L+   T N          A+ S   PTT 
Sbjct: 773  SSPVLPTTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTT 832

Query: 457  TGLTSPCLPSGSVRTPLT 404
            + LTS  + S S+ T  T
Sbjct: 833  SVLTS-SMESSSIATTST 849


>SB_12834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1261

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = -2

Query: 446  FPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAE-FQAPTGEWKGV 270
            FPLP   F        +LR  ++    +L+   ++   RA+  +   E F++P G  KG 
Sbjct: 1034 FPLPVGFFCLVYCLFMSLRGTQRNS-NELSESYRERETRAAVLEVVCEAFRSPAGSSKGA 1092

Query: 269  VGWALVLSSLAAWIYMAMKVFVYSP 195
            V W  VL++   ++++ +  F+ SP
Sbjct: 1093 VYWESVLTA-RRFVFLCLAAFIKSP 1116


>SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)
          Length = 431

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 2/78 (2%)
 Frame = -2

Query: 491 GYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKG--DWRKLTLEEKKTLYRASFC 318
           GY + G     D  +  LP             +R    G  +W +LT+ E  TLY     
Sbjct: 258 GYNYEGGKALDDEQETKLPTFWATPMKHVCIGMRNSSGGTVEWLQLTVRELTTLYEVFST 317

Query: 317 QTFAEFQAPTGEWKGVVG 264
                   P  +W G+VG
Sbjct: 318 NNHHPTNIPLSKWLGLVG 335


>SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 525 SVSSGSSPGADRNTDSIDERPAH---QIIGHFAGRIGL 629
           +V +  +P  +    +IDE+PAH   Q +GH AG I L
Sbjct: 7   TVCTKQNPIFEEEMQNIDEKPAHENLQAMGHMAGSISL 44


>SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)
          Length = 336

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 148 ECWTLR*IPSMDLPPSGTTKTTAGSK 71
           +C T+R IPS D+P +G  KT  GS+
Sbjct: 170 QCNTIRGIPSFDMPFNGVLKTGNGSQ 195


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 371 WRKLTLEEKKTLYRASFCQTFAEFQAPTGEW 279
           WRK +  EKK +     C+T + +  P+G W
Sbjct: 210 WRKASHAEKKVVRACPICRTPSGYVVPSGVW 240


>SB_18948| Best HMM Match : ANF_receptor (HMM E-Value=7.2e-17)
          Length = 335

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +3

Query: 372 ITLFFFTESLNVRGVLTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSSPG 551
           +T   F +++ + G LT P  R    +P+   G  V  IA P       +FS SS     
Sbjct: 88  VTWQIFHQAVAIVGPLTSPMVRA--TQPL-CSGFHVPQIA-PYATDPAFEFSPSSYKYLL 143

Query: 552 ADRNTDSIDERPAHQIIGHFA-GRIGL 629
             R++DSI+ R     IGHF   R+GL
Sbjct: 144 RMRSSDSIENRAIADFIGHFNWTRLGL 170


>SB_12684| Best HMM Match : ANF_receptor (HMM E-Value=2e-05)
          Length = 253

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +3

Query: 372 ITLFFFTESLNVRGVLTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSSPG 551
           +T   F +++ + G LT P  R    +P+   G  V  IA P       +FS SS     
Sbjct: 88  VTWQIFHQAVAIVGPLTSPMVRA--TQPL-CSGFHVPQIA-PYATDPAFEFSPSSYKYLL 143

Query: 552 ADRNTDSIDERPAHQIIGHFA-GRIGL 629
             R++DSI+ R     IGHF   R+GL
Sbjct: 144 RMRSSDSIENRAIADFIGHFNWTRLGL 170


>SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4)
          Length = 332

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
 Frame = -2

Query: 539 STGNTELAKIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRKL 360
           +TG T+L ++          N +    DRP   L ++    D P   AL        R +
Sbjct: 66  NTGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSV 125

Query: 359 TLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSL 180
           T        R  FC+ +A    P      VVG  L ++ +A W Y   ++     I DS 
Sbjct: 126 TATLASADVRRCFCR-YA--PPPIASVYLVVGLLLAVAVVAIW-YCHKQIVESRRIRDSG 181

Query: 179 SEE-RQKAQLQRMLDLKVNPIDGLASKW--DYENNR 81
            ++ R++ + +RM D +V  ++    +W   Y  NR
Sbjct: 182 EQQPRRRRRPRRMNDSQVVSVN---QQWFDHYSGNR 214


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 203  TQRLSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDR 322
            T   S P +S    M    PN  +PST + GP   RR +R
Sbjct: 1035 TPNTSMPTKSTPTSMPRKTPNTFIPSTPQVGPTPPRRGNR 1074


>SB_54712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 42  KCLLASAVSNLLPAVVFVVPLGGKSIDG 125
           KC+LA  + +L+P V+   P+ G  +DG
Sbjct: 53  KCMLACEIFSLVPGVLIGFPVVGFPVDG 80


>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
          Length = 341

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 392 REKEKGDWRKLTLEEKKTLYRASFCQT 312
           RE  + D ++  +E+KK + +A+FCQT
Sbjct: 77  REILENDEKRCPIEDKKKVKKATFCQT 103


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +2

Query: 404 CQGCPHGTGWQAGGSQACLRSWAGR*NHSLPT 499
           C+ CP GT     GS  CLR   G    SLPT
Sbjct: 612 CKPCPSGTFTDVPGSSECLR--CGANTVSLPT 641


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,142,839
Number of Sequences: 59808
Number of extensions: 531058
Number of successful extensions: 1618
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1618
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)