Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d11r
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro...    31   0.70 
At3g23070.1 68416.m02908 expressed protein contains Pfam domain,...    29   2.1  
At1g67650.1 68414.m07720 expressed protein                             29   2.1  
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun...    29   2.8  
At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsi...    29   2.8  
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ...    29   3.8  
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr...    29   3.8  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   3.8  
At1g02570.1 68414.m00208 expressed protein                             29   3.8  
At5g61580.1 68418.m07727 phosphofructokinase family protein simi...    28   6.6  
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi...    28   6.6  
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ...    27   8.7  
At3g09030.1 68416.m01059 potassium channel tetramerisation domai...    27   8.7  
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    27   8.7  
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote...    27   8.7  

>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
           protein similar to HMG protein [Arabidopsis thaliana]
           GI:2832361; contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 151

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = -2

Query: 428 RFREDTPDIKALRE--KEKGD-WRKLTLEEKKTLY 333
           +++E+ PD+K++RE  K  G+ W+ +T EEK   Y
Sbjct: 80  QYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYY 114


>At3g23070.1 68416.m02908 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 881

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +2

Query: 23  SLHYNPEVFTRQCSIKFTSSGCFRSPTWRQVHRWDSP*GPTFSGAEPSASLHSMSQE*DC 202
           SLH+ P   T++    F SS CFR   +       S  G TFS      +    S   DC
Sbjct: 6   SLHFCPTTVTKKFVYSFQSSFCFRFLRYSSSISLGSCKGVTFSSRNDQIASRRFSFSRDC 65


>At1g67650.1 68414.m07720 expressed protein
          Length = 651

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +2

Query: 149 SGAEP--SASLHSMSQE*DCTQRLSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDR 322
           SGA+P    S  S+SQE    +++    + K PK   LE +   P   RW P  +R S R
Sbjct: 535 SGAKPIEGISAASLSQEEVKKEKVKRKRKPKYPKGFDLENSGPTPDPERWLPRRERSSYR 594

Query: 323 MK 328
            K
Sbjct: 595 PK 596


>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 497 WVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKA 396
           W    F G   Y+ R +F LP+I   E TP+ KA
Sbjct: 346 WKIKSFPGNKEYMLRAEFHLPSITAEEATPERKA 379


>At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsis
           hypothetical protein PID:e326839 (gb|Z97337) contains
           transmembrane domains
          Length = 416

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 428 RFREDTPDIKALREKEKGDWRKLTLEEK--KTLYRASFCQTFAEFQAPTGEWKGVVGWAL 255
           R    TP I  LREK + D  KLTL  +  KTL R      F   +  +      VGW +
Sbjct: 6   RASSKTPAISGLREKHQQDLEKLTLTSQPFKTL-RLFVVAVFLYVRRWSSYLLANVGWLI 64

Query: 254 VLSSL 240
           +  S+
Sbjct: 65  LFCSI 69


>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit (Ath-A), Arabidopsis thaliana
          Length = 1084

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 607 WPII*CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVS 497
           WP         M+ VFL + G+  +E   LPRLV VS
Sbjct: 490 WPGNSVRDHPGMIQVFLGSDGVRDVENNELPRLVYVS 526


>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
           (RPOMT) identical to SP|P92969 DNA-directed RNA
           polymerase, mitochondrial precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 976

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 530 NTELAKIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEK 378
           N ++  + DR W   G  G    VDR D P+P    RED    K  R + K
Sbjct: 468 NKKVLSLVDRIWANGGRIG--GLVDREDVPIPEEPEREDQEKFKNWRWESK 516


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 434 AIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYR 330
           A+  +  TP IKA++E+  GD  K+ LE  + LY+
Sbjct: 666 AMAMKSLTPQIKAIQERYAGDQEKIQLETAR-LYK 699


>At1g02570.1 68414.m00208 expressed protein
          Length = 431

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 447 VRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSSP 548
           VRP  ++ +++ ++  PL+   L + SVSS S+P
Sbjct: 17  VRPFQMISISLLSLLVPLSFLFLSRLSVSSSSAP 50


>At5g61580.1 68418.m07727 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 530

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 482 FNGQPNYVDRPDFPLPAIRFREDTPDIKALREK 384
           FN   N + R DFPLPA++ ++ +   + L +K
Sbjct: 18  FNPSSNVLPRRDFPLPALKLKKVSVLPRILHQK 50


>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat;
           similar to ESTs gb|R30192 and gb|AA651017
          Length = 913

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 434 QAGGSQACLRSWAGR*NHSLPTHGHQSWQVQCFQWIQPWRRQEHG 568
           QA G Q   +SW+ +   S P+   QSW  Q     QPW  Q  G
Sbjct: 701 QAPGYQQ-QQSWSQQSGWSSPSGHQQSWTNQTAGQQQPWANQTPG 744


>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to Fzr1
           (GI:6463679){Homo sapiens}
          Length = 481

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 443 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQW 538
           GSQ C  +W+   N  + THG+   Q+  +++
Sbjct: 384 GSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKY 415


>At3g09030.1 68416.m01059 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 460

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 575 NAIRVPVCARAGSTGNTELAKIGDREWV 492
           ++I   VC+++G  G  ++ K+G+  WV
Sbjct: 330 DSILFKVCSKSGDLGMADIRKLGEDPWV 357


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 419 EDTPDIKALREKEKGDWRKLTLEEKKTLYR 330
           ED P I     + KGDW K  + E+ + YR
Sbjct: 241 EDPPRILHFNPRLKGDWSKKPVIEQNSCYR 270


>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GI:4105699
           from [Arabidopsis thaliana]
          Length = 996

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 640 SYNSSPILPAKWPII*CAGR-SSMLSVFLSAPGL 542
           S+NS+   P +W  + CAG  SS+ SV LS+  L
Sbjct: 39  SWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANL 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,254,611
Number of Sequences: 28952
Number of extensions: 373590
Number of successful extensions: 1022
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)