Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d11f
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    38   0.001
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.39 
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    28   1.2  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   3.7  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   3.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   4.8  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   6.4  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   6.4  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    25   8.5  
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    25   8.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   8.5  

>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 26/101 (25%), Positives = 45/101 (44%)
 Frame = +1

Query: 271 IKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIY 450
           I  L  ++K  W  L++EEKK  Y  +F +      +   +    V W  V       + 
Sbjct: 55  ITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQ--KTVFWGTVAGLTIGVVL 112

Query: 451 MAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 573
             +     +P P +++ E Q+   + M + K+NPI G AS+
Sbjct: 113 FGLIRTQAAPSPRTMTREWQEKSNEYMKENKINPISGEASE 153


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 44  SSPILPAKWPII*CAGRSSMLSVFLSAPGLDPLETLNLPRLV 169
           S+ +LP+  PI+   GRSS LSV       D   TLN P  +
Sbjct: 431 SATVLPSSTPILLPRGRSSTLSVNKKQFNADDGSTLNSPNSI 472


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 238 PAIRFREDTPDIKALREKEKGDWRKLTLEEK 330
           P   FR +  + K  RE++K +W+K   E+K
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKKAREEDK 140



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 256 EDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWK 399
           ED  + K  RE++K +W+K   E+K    +A   +   E++    EW+
Sbjct: 149 EDKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 256 EDTPDIKALREKEKGDWRKLTLEEK 330
           ED  + K  RE++K +W+K   E+K
Sbjct: 127 EDKAEWKKAREEDKAEWKKAREEDK 151



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 256 EDTPDIKALREKEKGDWRKLTLEEK 330
           ED  + K  RE++K +W+K   E+K
Sbjct: 138 EDKAEWKKAREEDKAEWKKAREEDK 162


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 232 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQW 137
           GSQ C  +W+   N  + THG    QV  +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 271 IKALREKEKGDWRK---LTLEEKKTLYR 345
           I+ALREK K    K   L LEEKKT Y+
Sbjct: 49  IEALREKAKEKKEKERILALEEKKTNYK 76


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 582 VVPLGGKSIDGIHLKVQHSLELSL 511
           +VP G K I  IHLK   S+ + L
Sbjct: 228 IVPDGAKGIASIHLKTSQSIAIPL 251


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 394 WKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLAS 570
           WK + G  L +S   + I   +   VY P+ D  +   Q A L+R+ +      + +AS
Sbjct: 79  WKQLEGETLEISRYHSQIIGQIASQVYKPLIDYYTSSPQTATLRRLAERLSTVAEEMAS 137


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 481 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 588
           +P  +  ERQ   ++ +L+   +P+DG  ++ DY N
Sbjct: 27  LPKIVLSERQFCDVELILNGGFSPLDGFMNQKDYLN 62


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 259 DTPDIKALREKEKGDWRKLTLEEKKTLYRA 348
           D P I + R+ E    RKL+ +EKKTL +A
Sbjct: 194 DNPTIHS-RQLESMAGRKLSTDEKKTLKKA 222


>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 258 LTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKFSVSSGSS 130
           +T  DGR   +  VY+ G  +  +  P  + N   F V  G S
Sbjct: 46  VTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFKVGPGRS 88


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 319 GSICANHP-FLFHGEP*CQGCPHGTGWQAGGSQACL 215
           G  C+  P ++   E   QGCP G+   AGG+  C+
Sbjct: 285 GDTCSGLPCYVDPRENGVQGCPEGSPIGAGGACFCV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,909
Number of Sequences: 5004
Number of extensions: 58241
Number of successful extensions: 158
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)