Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d11f
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0133 - 1057679-1057880,1058112-1058377 30 1.6
03_06_0083 - 31532213-31532775,31534016-31534043 29 3.8
03_06_0040 + 31240164-31241102,31241280-31241897 28 5.0
12_01_0862 + 8161117-8163913,8164000-8164019 27 8.7
11_06_0198 - 21158350-21159528 27 8.7
10_08_0508 - 18416688-18416795,18417058-18417477 27 8.7
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174... 27 8.7
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 27 8.7
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 27 8.7
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 27 8.7
02_02_0652 - 12651163-12653210,12653327-12653627 27 8.7
01_01_0525 - 3854508-3854924 27 8.7
>03_01_0133 - 1057679-1057880,1058112-1058377
Length = 155
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 475 CTQ--RLSWPCRSKQPKMRGLEPNQRLPSTLR 386
CT+ RL WPCR QP +GL P R L+
Sbjct: 64 CTRGARLGWPCR--QPNTKGLHPWMRASELLK 93
>03_06_0083 - 31532213-31532775,31534016-31534043
Length = 196
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 281 RALMSGVSSRNR--MAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPALA 123
R + V +R R ++G G+ GLS LG + P +P L+SS+ DP LA
Sbjct: 94 RGRVGDVEARRRPEISGDGRRGLSMALGSGVVPRSPMVLTPALSSSLARYDPDLA 148
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 484 PDSLSEERQKAQ-LQRMLDLKVNPIDGLASKWDY 582
PD+ ++ +AQ L+ +LD ++NP+ G A+ WDY
Sbjct: 202 PDADTDMSMEAQELRHVLD-ELNPLIGAANLWDY 234
>12_01_0862 + 8161117-8163913,8164000-8164019
Length = 938
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 251 NRMAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVD 135
NR+ +G S ++ LG K P H ++ L S+FP D
Sbjct: 407 NRLDNQGLSMVTRLLGLSYKHLPVHLKNCFLLCSIFPED 445
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Frame = -1
Query: 175 HGHQSWQVQ-CFQWIQPWRRQE 113
H H W+ Q C Q + WRRQE
Sbjct: 262 HHHDQWKKQQCMQDCRQWRRQE 283
>10_08_0508 - 18416688-18416795,18417058-18417477
Length = 175
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 189 WFQRPAQLRRQA*LPPACHPVP*GHP 266
W + A+ R + LP CHPVP G P
Sbjct: 92 WIETAARQRGKLRLPKQCHPVP-GSP 116
>08_01_0217 +
1738321-1739104,1739683-1739915,1740002-1740292,
1740524-1740616,1740912-1741040,1741522-1741695,
1741883-1741990,1742073-1742279
Length = 672
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 256 EDTPDIKALREKEKGDWRKLTLEEKKTLYR 345
ED P I L + +GDW + + E T YR
Sbjct: 212 EDPPRILHLNPRLRGDWSQRPIIEHNTCYR 241
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 220 RPDFPLPAIRFREDTPDIKALREKEKGDWRK 312
+ D P A R R+DT D K RE+ + +RK
Sbjct: 24 KDDSPNKAARLRDDTDDDKGKRERRRWLFRK 54
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 250 TGWQAGGSQACLRSWAG 200
TGW AGG C +W G
Sbjct: 44 TGWSAGGGDPCGAAWMG 60
>02_05_1142 -
34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 91 ALINAIRVPVCARAGSTGNTELAKIGDREWVG 186
AL+ +PVCA G GN + + R W G
Sbjct: 352 ALVRPAVLPVCAMTGGGGNDKRSPPQQRSWWG 383
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 32 FSYNSSPILPAKWPII*CAGRSSMLSVFLSAPGLD 136
+ +P++P+KW + GR+ +LS F LD
Sbjct: 554 YDVTGTPVMPSKWIHVVAVGRTWLLSAFALINFLD 588
>01_01_0525 - 3854508-3854924
Length = 138
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 166 GDREWVGY-GFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRK--LTLEEKKT 336
G + W G++GQP+Y+D PA R E P+ A E+ G ++ + EEK
Sbjct: 48 GGKWWAPLLGWSGQPDYIDAQ----PAAR-EEARPNPMAAAEQRGGGGKRFGVLTEEKAR 102
Query: 337 LYRASFCQT 363
RA +T
Sbjct: 103 QLRARMMET 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,438,677
Number of Sequences: 37544
Number of extensions: 430444
Number of successful extensions: 1188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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