Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d10r
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ...    29   7.3  

>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
           protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 22  LGNNNKTKQNMTFPCK*NIVPNGYLLEAEIYRYHTY 129
           +GN  K ++   FPC       GY+ E   Y +H Y
Sbjct: 1   MGNKIKIRKLCRFPCFQEFEAEGYICEFLEYNFHNY 36


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,866,050
Number of Sequences: 53049
Number of extensions: 528582
Number of successful extensions: 774
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)