Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d10r
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18245.1 68415.m02127 expressed protein                             29   2.0  
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ...    29   2.0  
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    29   3.6  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    28   4.7  
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro...    27   8.2  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    27   8.2  

>At2g18245.1 68415.m02127 expressed protein
          Length = 398

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 175 RYIEWYNTHGFNQYSHRYDIDKSLPL 98
           RY+EWYN+ G N  +   D+   L L
Sbjct: 140 RYVEWYNSRGINAVTFTVDVRDLLRL 165


>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 653

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 82  ALCFTCREKSYFV*SYYYYQGTYCSL 5
           ++CFTC+ K+     YYYY  T C+L
Sbjct: 31  SICFTCKGKNLTCRKYYYYCAT-CNL 55


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 82  ALCFTCREKSYFV*SYYYYQGTYCSL 5
           ++CFTC+ K     +YYYY  T C+L
Sbjct: 38  SICFTCKGKQLRSSAYYYYCAT-CNL 62


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 336 YLHALYSIQFLKC*LILLNTN*KIYFIVVVFCLF 437
           YLH++Y+     C     NTN K+ F++  F LF
Sbjct: 50  YLHSIYTFSLNPC--SETNTNMKVVFVIFFFFLF 81


>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 755

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 217 VLPCSISTRGYGCYRYIEWYNTHGFNQYSHRYDIDKSL 104
           VLP    T  Y   ++  +Y +H F+Q  H Y+I + L
Sbjct: 315 VLPIFYWTNAYDAQKF-PFYTSHTFDQTGHTYNITRIL 351


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 82  ALCFTCREKSYFV*SYYYYQGTYCSL 5
           ++CFTC+ K      YYYY  T C+L
Sbjct: 44  SICFTCKGKHLKRSKYYYYCAT-CNL 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,767,286
Number of Sequences: 28952
Number of extensions: 258898
Number of successful extensions: 397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)