Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d10f
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 28 1.2
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 28 1.2
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 1.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 1.6
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.3
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 25 8.4
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 25 8.4
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.4
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 299 SICYLNSLL*YYFI 258
++CYLNSL+ YYFI
Sbjct: 621 NLCYLNSLIQYYFI 634
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/109 (21%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Frame = +3
Query: 201 KQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQ 380
++ +Q+ K K + ++A KI KR++ + ++++ +KQR +R Q
Sbjct: 175 RKKLQKPIEKPKKEKIEATPKIDGGKRLKNEKSSAEISQTSKQRPSRRSARVRMATDNAQ 234
Query: 381 MTPVNV-FPKAT--KFTRTVVNKDRVFTDTSRQVVSQPLNTPNLRRQIN 518
+P + PK T K R + + + + ++QP++T ++ Q++
Sbjct: 235 KSPSPIPSPKKTAKKRVRFAGSLEELPKFSLEYQLAQPISTVDMYAQVH 283
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 108 MFEFGIWRSLLKKIGRYSTVYFL 40
MFEF ++ S+++KI R +YFL
Sbjct: 722 MFEFAVFISMVRKIVRPGVLYFL 744
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -2
Query: 320 KFGQFVSSICYLNSLL*YYFISSIHNLWFSFESSLLNTLLSMFILSFRPD 171
+ G+ + + +LNSLL + + +++L+ S L L SM LS R +
Sbjct: 479 ELGRMIEDLPFLNSLLRTFLPTLVYSLFISISPFLFRWLSSMQGLSSRAE 528
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -2
Query: 308 FVSSICYLNSLL*YYFISSIHNLWFSFESSLLNTLLSMFILSFR--PDVYFLFLY 150
F S L L +F + L FSF S L L +FI+ F P ++FLF +
Sbjct: 105 FTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFF 159
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 427 LLSTKIECSQIHPGKLSHSL*THLILDVKSTINVD-L*EIKQLVHKKYIK 573
+L+ + + PGK HS T LIL++ T +D IK +KYIK
Sbjct: 231 ILAEMLSARPLFPGKDYHSQIT-LILNILGTPTMDDFSRIKSARARKYIK 279
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = +3
Query: 558 QKIHKNPQPQK 590
QKIH+NPQP++
Sbjct: 125 QKIHRNPQPRR 135
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 400 FQRPPNS-LELLSTKIECSQIHPGKLSHSL 486
F + PN +E+ + K CS H G++S SL
Sbjct: 116 FSKTPNKHIEVKNLKDLCSPSHSGRISKSL 145
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.0 bits (52), Expect = 8.4
Identities = 23/126 (18%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Frame = +3
Query: 180 KRQNKHGKQGVQ--QGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRD-ARLKL 350
+++NK K + Q L +K +++ + + + R + A KLAE+ +RD K+
Sbjct: 398 EQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEINSERDFQNKKI 457
Query: 351 EHLKMQRRGQMTPVNVFPKATKFTRTVVN-KDRVFTDTSRQVVSQPLNTPNLRRQINNKR 527
+ + + +N K +++ KD+ + Q+ Q + + + + + +
Sbjct: 458 KDFEKIEQDLRACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQ 517
Query: 528 RFVGNK 545
R + N+
Sbjct: 518 RDILNE 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,173
Number of Sequences: 5004
Number of extensions: 44477
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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