Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d10f
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_6152| Best HMM Match : rve (HMM E-Value=0.0036)                     29   2.2  
SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)                29   2.9  
SB_23050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   3.8  
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)        28   5.0  
SB_44458| Best HMM Match : Filament (HMM E-Value=1)                    28   6.6  
SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                 27   8.7  
SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_41664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_58447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 731

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
 Frame = +3

Query: 213 QQGALKAKPQVMDARNKIISKKRIQITDARDKLAEL-AKQRDARLKLEHLKMQRRGQMTP 389
           Q+  L+      D  N  ++K R ++    ++LA+   +Q     KLE LK ++      
Sbjct: 95  QRAELEKGDNFPDGENNEVNKLRQELLKHHNELAQADERQYQLEFKLEGLKEEKMMLERE 154

Query: 390 VNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTPNLRRQINNKRRFV 536
               PKA +  + +   ++   D   ++  + + T +LR ++ N+++ V
Sbjct: 155 YGRMPKAGEIEKQLKEVNKSVEDLKIEIAQRTVETKSLREELENRQKLV 203


>SB_6152| Best HMM Match : rve (HMM E-Value=0.0036)
          Length = 555

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
 Frame = +3

Query: 189 NKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQ 368
           +K  K+GV  G +  +  ++D    I  + R  I +A+D   EL KQ       + + ++
Sbjct: 450 SKKWKKGVCIGKVAPRSHLVDIDGSIYRRNRKFIRNAKDHAEELVKQNLPMQHPQPVSVE 509

Query: 369 RRGQMTPVNVFPKATKF--TRTVVNKDRVFTDTSRQVVSQPL 488
                T  N  P   +   T   VN+  + T  + ++V  P+
Sbjct: 510 LDTGSTDENHLPTPPEVNPTTPAVNQLSLRTTRNERIVKPPV 551


>SB_50214| Best HMM Match : RNA_capsid (HMM E-Value=9.8)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 405 KATKFTRTVVNKDRVFTDTSRQVVSQPLNTPNLRRQINNKRRFVGNKAVGTQKIHK 572
           KA+       NK +V  DT+R+   +P     +  ++NNK   +G K + T  +H+
Sbjct: 325 KASNGATVQSNKGQVPKDTTRKKTRKPFANHRIGERMNNKHEGIGLKII-TPLLHE 379


>SB_23050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 392 YRCHLSSSLHFEMF*LQSSIPLLCKFGQFVSSICYLNSLL*Y 267
           Y CHLS  + ++   L   I   C F   ++  C+LN ++ Y
Sbjct: 204 YDCHLSDMITYDCH-LSDMITYDCHFSDMITYDCHLNDVITY 244


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
 Frame = +3

Query: 180  KRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQ----ITDARDKLAELAKQRDARLK 347
            K +NK  K  + +  ++ K     A++    KK ++        R K  E+A + + RLK
Sbjct: 2502 KERNKDLKDEIAELMIQVKEAKTAAKSNEQDKKDLENEIISLKGRIKKLEIALEEERRLK 2561

Query: 348  LEHLKMQ-----RRGQM------TPVN-VFPKATKFTRTVVNKDRVFTDTSRQVVSQPLN 491
             E+LK Q     +RG        T +N ++ +   +   + +KDR+  D   + V     
Sbjct: 2562 -ENLKSQVNDYRKRGDDQSKDFGTRMNELYVEIENYRTDLADKDRIIRDQKSRQVDMDNE 2620

Query: 492  TPNLRRQINNK 524
               L+R +NN+
Sbjct: 2621 INKLKRDLNNQ 2631


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 234  KPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMT 386
            K QV D   K+ S+++      +D  AEL     AR++LE+  +   GQ+T
Sbjct: 2116 KKQVADLIKKLESERKGYEQQIKDLKAELEAGMQARIELENELLLYSGQLT 2166


>SB_37670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -3

Query: 496 GVFRGCETTCLDVSVNTLSLLTTVRVNLVAFGKTFTGVICPLLCILRCSSFNLASLCFAS 317
           G+F  CE     V  +  S LT+V     A      G++C  +   R  S  +  + F S
Sbjct: 436 GMFSFCELGSCRVIESVRSSLTSVNTRTTALQSAPVGLVCSSVVDNRAKSQEIYDVSFQS 495

Query: 316 SANLS 302
           S  +S
Sbjct: 496 STCIS 500


>SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)
          Length = 372

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 180 KRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAEL 320
           K+  K  K+ ++   +KAK    ++ NK + KK+ Q+    ++L +L
Sbjct: 194 KKTVKEAKKELKALRVKAKESKSESNNKAVEKKKAQVQRLEEQLFKL 240


>SB_44458| Best HMM Match : Filament (HMM E-Value=1)
          Length = 748

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = +3

Query: 225 LKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLK----LEHLKMQRRGQ 380
           +K      D + K+I + R ++  A+++  +L KQR+ +++    L+   MQ+R Q
Sbjct: 553 VKDTSSAKDRKQKVIEELRGELRRAKNERVDLEKQREQKVRRAKTLQTQTMQKRNQ 608


>SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 448 TLSLLTTVRVNLVAFGKTFTGVICPLLCILRCSSFNLASLCFASSANLS 302
           +++L+TT  VN+      F  +  P+L     +  +  SLC+ SSAN++
Sbjct: 135 SVALMTTTSVNVSHLTILFLLISQPMLTTSSWNCSHSPSLCYFSSANMA 183


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 469 CLDVSVNTLSLLTTVRVNLVAFGKTFTGVICPLLCILRCSSFNLASLCF 323
           CL V +  LS+L  + V         +  +CPLL I  C    L S+C+
Sbjct: 133 CLSVGIPLLSVLNCLSVTFCLSIVCLSITVCPLLSITVCP---LLSVCY 178


>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1124

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 234 KPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMTPVNV--FPK 407
           KP     + K+  KKR +I   + KL     ++DA  K++    +   Q   VN   F K
Sbjct: 269 KPNERRPKKKLKYKKRSKINSHKKKLINAKAKKDATKKVQVAVQETATQRVQVNAGKFHK 328

Query: 408 ATKFTRTVVNKD 443
             K  R +  ++
Sbjct: 329 RGKTRRKLTREE 340


>SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
 Frame = +3

Query: 174 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 353
           R  R+N   +   +QG      +VM  + +  + +R+    AR+     +  R AR   +
Sbjct: 3   RQARENTFRRAMSRQGLENTDRRVMGIQARENTDRRVMGIQARENTDRRSVSRQARKNTD 62

Query: 354 HLKMQRRGQMTPVNVFPKATKFT-RTVVNKDRVFTDTSRQVVSQPLNTPNLRRQINNKRR 530
              M   G     N   +A + T R V+++  V T T RQV+         RR ++ + R
Sbjct: 63  RRVM---GIQARENTDRQAHENTDRRVMSRQLVKTRTDRQVMDIQARENTDRRAMDIQAR 119

Query: 531 FVGNKAVGTQKIHKN 575
              ++   +++  KN
Sbjct: 120 ENTDRRSVSRQARKN 134


>SB_41664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 2/128 (1%)
 Frame = +3

Query: 168  NIRSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLA-ELAKQRDARL 344
            N R++  NK  + G ++  +  K   M  +   +  KR ++ + R ++  +  +  + R 
Sbjct: 674  NKRTRMGNKRTRMGNKRTRMGNKRTRMGNKRTRMGNKRTRMGNKRTRMGNKRTRMGNKRT 733

Query: 345  KLEHLKMQRRGQMTPVNVFPKATKFTRTVVNKDRVFTDTSR-QVVSQPLNTPNLRRQINN 521
            ++ + + +   + T +          RT +   R      R ++ ++     N R +I N
Sbjct: 734  RIGNKRTRMGNKRTRMGNKRTRMGNKRTRMGNKRTRMGNKRTRIGNKRTRIGNKRTRIGN 793

Query: 522  KRRFVGNK 545
            KR  +GNK
Sbjct: 794  KRTRIGNK 801


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,666
Number of Sequences: 59808
Number of extensions: 320182
Number of successful extensions: 1098
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)