Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d10f
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p... 31 0.47
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p... 31 0.47
AC024758-2|AAK73905.2| 208|Caenorhabditis elegans Hypothetical ... 31 0.82
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p... 30 1.1
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p... 30 1.1
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos... 30 1.1
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ... 30 1.1
AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical ... 30 1.4
AC017117-8|AAF16611.1| 138|Caenorhabditis elegans Hypothetical ... 29 3.3
U23511-7|AAC46795.1| 435|Caenorhabditis elegans Hypothetical pr... 28 4.4
U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light ... 28 5.8
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 28 5.8
>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 31.5 bits (68), Expect = 0.47
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +2
Query: 206 RCSARSSQS*TTSYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*IEARTSQNAKKRTN 382
RC+ S SY C E + C Q + +C + C ++ K+ N
Sbjct: 393 RCTGAGSD---LSYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLN 448
Query: 383 DTCKCFSKGHQIHSNCCQQR*SVHRYIQASCL 478
+C S+GH H CC Q V + Q +C+
Sbjct: 449 TWVQCASEGHD-HLRCCLQE-EVSKPCQTACM 478
>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
protein T04A11.3 protein.
Length = 1014
Score = 31.5 bits (68), Expect = 0.47
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +2
Query: 206 RCSARSSQS*TTSYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*IEARTSQNAKKRTN 382
RC+ S SY C E + C Q + +C + C ++ K+ N
Sbjct: 214 RCTGAGSD---LSYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLN 269
Query: 383 DTCKCFSKGHQIHSNCCQQR*SVHRYIQASCL 478
+C S+GH H CC Q V + Q +C+
Sbjct: 270 TWVQCASEGHD-HLRCCLQE-EVSKPCQTACM 299
>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 31.5 bits (68), Expect = 0.47
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
Frame = +2
Query: 206 RCSARSSQS*TTSYGC*K*NNIKEENSDNRCSRQ-IGRTCKAEGC*IEARTSQNAKKRTN 382
RC+ S SY C E + C Q + +C + C ++ K+ N
Sbjct: 393 RCTGAGSD---LSYCCPHDGTHSSEEFTSCCKEQKMPESCMSS-CQYNMTLPESCKENLN 448
Query: 383 DTCKCFSKGHQIHSNCCQQR*SVHRYIQASCL 478
+C S+GH H CC Q V + Q +C+
Sbjct: 449 TWVQCASEGHD-HLRCCLQE-EVSKPCQTACM 478
>AC024758-2|AAK73905.2| 208|Caenorhabditis elegans Hypothetical
protein Y37E11AM.2 protein.
Length = 208
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 237 PQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMTPVNVFPKA 410
P D + +SKK +T D L E + + R +++R+GQ V+ PKA
Sbjct: 13 PDEEDTECRKVSKKIASVTLESDSLPESPQTAEERTARRKKRIKRKGQQMDVDPTPKA 70
>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 174 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 353
+S ++ + K+G++ K +D +NK KK+++ ++RD E A A L +
Sbjct: 249 KSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKME--ESRDDQHEEAALSAAHLSKQ 306
Query: 354 HLKMQR---RGQMT-PVNVFPKATKFTRTVVNKDRVFTDTSRQ 470
+ +Q+ + Q+ +N K + ++KDR D R+
Sbjct: 307 SIMLQKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAKRK 349
>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 174 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 353
+S ++ + K+G++ K +D +NK KK+++ ++RD E A A L +
Sbjct: 249 KSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKME--ESRDDQHEEAALSAAHLSKQ 306
Query: 354 HLKMQR---RGQMT-PVNVFPKATKFTRTVVNKDRVFTDTSRQ 470
+ +Q+ + Q+ +N K + ++KDR D R+
Sbjct: 307 SIMLQKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAKRK 349
>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
and X-chromosomeassociated MIX-1 protein protein.
Length = 1244
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 174 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 353
+S ++ + K+G++ K +D +NK KK+++ ++RD E A A L +
Sbjct: 249 KSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKME--ESRDDQHEEAALSAAHLSKQ 306
Query: 354 HLKMQR---RGQMT-PVNVFPKATKFTRTVVNKDRVFTDTSRQ 470
+ +Q+ + Q+ +N K + ++KDR D R+
Sbjct: 307 SIMLQKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAKRK 349
>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 174 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLE 353
+S ++ + K+G++ K +D +NK KK+++ ++RD E A A L +
Sbjct: 249 KSAKEIEDAKKGIEDLGEKFNQLDLDLKNKEDEKKKME--ESRDDQHEEAALSAAHLSKQ 306
Query: 354 HLKMQR---RGQMT-PVNVFPKATKFTRTVVNKDRVFTDTSRQ 470
+ +Q+ + Q+ +N K + ++KDR D R+
Sbjct: 307 SIMLQKETVKNQLVETINKLKKEGEQINKSLSKDREVLDAKRK 349
>AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical
protein K09F6.9 protein.
Length = 609
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 186 QNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKM 365
+ K K+ +++ K + + R +R+Q +A+DK E A++ D E K
Sbjct: 374 EEKQKKENLERATQKEREHIERHREAQERHERLQALEAKDKEDERAREEDKAKAREEAKS 433
Query: 366 QR--RGQMTPVNVFPK 407
++ + + + V + PK
Sbjct: 434 KKDTKAEKSKVTIDPK 449
>AC017117-8|AAF16611.1| 138|Caenorhabditis elegans Hypothetical
protein F43C11.3 protein.
Length = 138
Score = 28.7 bits (61), Expect = 3.3
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = +3
Query: 204 QGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRG-- 377
Q + L +P+V+ R + K Q D + Q + E+L + G
Sbjct: 17 QAIPNVVLTGEPRVIARRILNVDMKTAQQLVHPDNQMHVKYQVNVVKNPENLATESSGYI 76
Query: 378 --QMTPVNVFPKATKFTRTVVNKDRVFTD 458
+ TPV ++ + + R N+DRV TD
Sbjct: 77 TEERTPVTIYRRILRPARITFNEDRVVTD 105
>U23511-7|AAC46795.1| 435|Caenorhabditis elegans Hypothetical
protein C32D5.7 protein.
Length = 435
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 474 VSQPLNTPNLRRQINNKRRFVGNKAVGTQKIHKNPQPQKI 593
V Q T L I+ +G GT +H+NP P I
Sbjct: 337 VGQRTQTSTLESNISGLEEAMGKATGGTPPVHRNPSPPVI 376
>U53151-1|AAB37069.1| 226|Caenorhabditis elegans Clathrin light
chain protein 1 protein.
Length = 226
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 240 QVMDARNKIISKKRIQI-TDARDKLAELAKQRDARLKLEH 356
Q++ +++ KK+I++ +A+ +L E KQR+ L+L H
Sbjct: 130 QLLSKKDEAEEKKKIELRANAKKELEEWYKQREKTLQLSH 169
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 174 RSKRQNKHGKQGVQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLK 347
+ KR+ K GK+G + A + A + R ++ + D +A++AK+ A+ K
Sbjct: 536 KEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGDSVADVAKKGGAKWK 593
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,936
Number of Sequences: 27780
Number of extensions: 247181
Number of successful extensions: 764
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -