Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d10f
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   6.9  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   9.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 316  NLQSRGMLD*S*NISKCKEEDK*HL*MFFQRPPNSLELLSTKIECSQI 459
            NLQS+   D +  +   +  DK H  +  Q PP++  L  T    S I
Sbjct: 1373 NLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSI 1420


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 316  NLQSRGMLD*S*NISKCKEEDK*HL*MFFQRPPNSLELLSTKIECSQI 459
            NLQS+   D +  +   +  DK H  +  Q PP++  L  T    S I
Sbjct: 1369 NLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSSTSSSI 1416


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 486 LNTPNLRRQINNKR----RFVGNKAVGTQKIHKNPQPQKI 593
           LNT +L + ++         VGN AVG    H++ Q Q +
Sbjct: 300 LNTQSLAKAVSKNGVLFVGLVGNSAVGCWNEHQSLQRQNL 339


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 464 GCICEHSIFVDNSSSEFG 411
           GCIC  + F D     FG
Sbjct: 78  GCICRKTSFKDLWDKRFG 95


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 53  VLYLPIFFRRLLHIPNSNI 109
           +LY P  F  LL  PN N+
Sbjct: 85  ILYDPGMFPALLKDPNGNV 103


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 74  FRRLLHIPNSNINHVV 121
           FR +L+   SN+NH++
Sbjct: 438 FREILYFRCSNLNHMM 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,011
Number of Sequences: 438
Number of extensions: 2867
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)