Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d10f
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53120.1 68416.m05854 expressed protein                             32   0.25 
At2g36680.1 68415.m04499 expressed protein                             31   0.77 
At2g27170.1 68415.m06029 structural maintenance of chromosomes (...    30   1.0  
At2g42480.1 68415.m05255 meprin and TRAF homology domain-contain...    30   1.3  
At5g19280.1 68418.m02298 kinase associated protein phosphatase (...    29   1.8  
At5g57410.1 68418.m07172 expressed protein                             29   2.4  
At5g27220.1 68418.m03247 protein transport protein-related low s...    29   2.4  
At1g79270.1 68414.m09241 expressed protein contains Pfam profile...    28   5.4  
At3g53640.1 68416.m05925 protein kinase family protein contains ...    27   7.2  
At2g29620.1 68415.m03598 expressed protein                             27   7.2  
At1g09810.1 68414.m01101 expressed protein contains Pfam profile...    27   9.5  

>At3g53120.1 68416.m05854 expressed protein
          Length = 217

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +3

Query: 225 LKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLK 347
           L+ +PQ+M+ RN+    +  ++  A++KL EL +Q++  LK
Sbjct: 112 LEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILK 152


>At2g36680.1 68415.m04499 expressed protein
          Length = 218

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 225 LKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLK 347
           L+ +PQ+++ RN+    +  ++  A++KL EL  QR+  LK
Sbjct: 112 LEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILK 152


>At2g27170.1 68415.m06029 structural maintenance of chromosomes (SMC)
            family protein similar to basement membrane-associated
            chondroitin proteoglycan Bamacan [Rattus norvegicus]
            GI:1785540; contains Pfam profile PF02463: RecF/RecN/SMC
            N terminal domain. No suitalble start codon was
            identified.
          Length = 1207

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/92 (21%), Positives = 44/92 (47%)
 Frame = +3

Query: 240  QVMDARNKIISKKRIQITDARDKLAELAKQRDARLKLEHLKMQRRGQMTPVNVFPKATKF 419
            + ++ + K++   R +I   R  ++    +    L ++HL  + R Q++ +N   K  K 
Sbjct: 744  KAIEYKEKLLGDIRTRIDQVRSSMSMKEAEMGTEL-VDHLTPEEREQLSKLNPEIKDLKE 802

Query: 420  TRTVVNKDRVFTDTSRQVVSQPLNTPNLRRQI 515
             +     DR+  +T +  +   + T NL+R+I
Sbjct: 803  KKFAYQADRIERETRKAELEANIAT-NLKRRI 833


>At2g42480.1 68415.m05255 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 743

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 225 LKAKPQVMDARNKIIS--KKRIQITDARDKLAELAKQRDARLKLEHLKMQRR 374
           LK+K +++  +NK     + RIQ  + R K  EL +  D + KLE + ++R+
Sbjct: 642 LKSKLELVSIKNKKADADRSRIQRLEERVKKLELMELDDLKSKLEEVSLERK 693


>At5g19280.1 68418.m02298 kinase associated protein phosphatase
           (KAPP) identical to Kinase associated protein
           phosphatase (SP:P46014) [Arabidopsis thaliana]; contains
           Pfam PF00481: Protein phosphatase 2C domain; contains
           Pfam PF00498: FHA domain
          Length = 581

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 195 HGKQGVQQGALKAKPQVMD--ARNKIISKKRIQITDARDKLAELAKQRDARLKLEH 356
           HG  G  Q A+K  P+V+     + +  +K +   DA D L ++  + +ARL+ EH
Sbjct: 348 HGGSGAAQSAIKIIPEVLANILSDSLRKEKVLSKRDASDVLRDMFAKTEARLE-EH 402


>At5g57410.1 68418.m07172 expressed protein
          Length = 373

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
 Frame = +3

Query: 324 KQRDARLKLEHLKMQRRGQMTPVNVFPKATKFTRTVVNKDRVFTDTSRQVVSQPLNTPNL 503
           +QRD   +    ++++R Q     +  K  +    +  KDR     +R   ++  NT  L
Sbjct: 74  RQRDIEFRESANELRQRQQSDIARLEAKVERLEALLQQKDREIATITR---TEAKNTAAL 130

Query: 504 RRQINN--------KRRFVGNKAVGTQKIHKNPQPQK 590
           + QI          +R  +GN+ V  Q+IH+  + +K
Sbjct: 131 KSQIEKLQQERDEFQRMVIGNQQVKAQQIHEMKKKEK 167


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 210 VQQGALKAKPQVMDARNKIISKKRIQITDARDKLAELAKQRDARLK 347
           V+   ++ K + +DAR + + KK  Q+  A  KLA+  K+ +   K
Sbjct: 581 VRSEKIELKDKKLDAREERLDKKDEQLKSAEQKLAKCVKEYELNAK 626


>At1g79270.1 68414.m09241 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 528

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  YLPIFFRRLLHIPNSNINHVVLDRNE 136
           Y P+ +  +  +PN  + H++L+ NE
Sbjct: 412 YFPVKWHIIKDVPNPQLRHIILENNE 437


>At3g53640.1 68416.m05925 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 642

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 3   DLKSISK*VCTTPENKLYCTYLFSLEDF 86
           +++ + K VC+ PENK +C  L S  ++
Sbjct: 371 EIRILKKLVCSDPENKHHCVRLLSTFEY 398


>At2g29620.1 68415.m03598 expressed protein
          Length = 747

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -2

Query: 578 WIFMYFLCTNCFISYKSTFI--VDLTSKI 498
           W+F + LC++  I++ S +I   DL+SKI
Sbjct: 50  WVFYFLLCSSPLIAFASFYIRNHDLSSKI 78


>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 428

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  YLPIFFRRLLHIPNSNINHVVLDRNE 136
           + P+ +  +  IPN  + H++LD NE
Sbjct: 280 FFPVEWHVVKDIPNWELRHIILDNNE 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,700,532
Number of Sequences: 28952
Number of extensions: 220275
Number of successful extensions: 661
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)