Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d09f
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    38   0.001
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    33   0.034
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   2.9  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.1  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   6.7  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   6.7  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   8.9  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   8.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 19/78 (24%), Positives = 40/78 (51%)
 Frame = +3

Query: 294 NVNQALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPI 473
           +++++ + S +  +P P++ D    ++    +++  P   P     PA+++P P   API
Sbjct: 696 DLDESFSGSEISSSPSPLLPDVSDTVEEQQKLLLKSPPPPP-----PAVIVPTPA-PAPI 749

Query: 474 EPTPVSPVIIGAPDLPNP 527
              P +P++ G P  P P
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 33.1 bits (72), Expect = 0.034
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
 Frame = +3

Query: 267 ASPLVQIIVNVNQALTPSPVEINPEPVIVDEESEIKPDPVIV-VDGPEVTPVIIADPAIV 443
           A+P+V    +V Q   P+ V + PE + V +       P +  V  P V PV+   P++ 
Sbjct: 549 AAPVVPEAPSVPQR--PA-VPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVP 605

Query: 444 LPEPVIVAPIEPT----PVSPVIIGAPDLPNP 527
            P    VAP  P+    P  PV+  AP +P P
Sbjct: 606 QPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637



 Score = 30.7 bits (66), Expect = 0.18
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
 Frame = +3

Query: 267 ASPLVQIIVNVNQALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVT--PVIIADP-A 437
           A+P+V    +V+Q   P    + PE     +    +P   +V + P V   P +   P A
Sbjct: 519 AAPVVPEAPSVHQ---PPAAPVAPEVPSAPQ----RPAAPVVPEAPSVPQRPAVPVVPEA 571

Query: 438 IVLPEPVI--VAPIEPT----PVSPVIIGAPDLPNP 527
           + +P+P +  VAP  P+    PV+PV+  AP +P P
Sbjct: 572 LSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQP 607



 Score = 29.9 bits (64), Expect = 0.31
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
 Frame = +3

Query: 273 PLVQIIVNVNQALTPSPVEINPEPVIVDEE--SEIKPDPVIVVDGPEVTPVIIADPAIVL 446
           P+  +   V     P    + PE   V +   + + P+   V   P V PV+   P++  
Sbjct: 578 PVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAV-PVVPEAPSVPQ 636

Query: 447 PEPVIVAPIEPT----PVSPVIIGAPDLPNP 527
           P    V P  P+    P  PV+  AP +P P
Sbjct: 637 PPAAPVVPEVPSVPQRPAVPVVPEAPSVPQP 667



 Score = 29.1 bits (62), Expect = 0.55
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = +3

Query: 267 ASPLVQIIVNVNQA-LTPSPVEIN--PEPVI--VDEESEIKPDPVIVVDGPEVTPVIIAD 431
           A P+V   ++V Q  + P   E+   P+P +  V  E+   P P +    PEV P +   
Sbjct: 564 AVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEV-PSVPQR 622

Query: 432 PAI-VLPEPVIVAPIEPTPVSPVIIGAPDLP 521
           PA+ V+PE   V      PV P +   P  P
Sbjct: 623 PAVPVVPEAPSVPQPPAAPVVPEVPSVPQRP 653



 Score = 26.2 bits (55), Expect = 3.8
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = +3

Query: 309 LTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPTPV 488
           +TPS  +    PV+ +  S  +P    V   PEV        A V+PE   V      PV
Sbjct: 510 ITPSVPQPPAAPVVPEAPSVHQPPAAPVA--PEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567

Query: 489 SPVIIGAPDLP 521
            P  +  P  P
Sbjct: 568 VPEALSVPQPP 578



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +3

Query: 315 PSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAI-VLPEPVIVAPIEPTPVS 491
           PS  +    PV+ +  S  +P    VV  PEV P +   PA+ V+PE   V      PV 
Sbjct: 617 PSVPQRPAVPVVPEAPSVPQPPAAPVV--PEV-PSVPQRPAVPVVPEAPSVPQPPAAPVV 673

Query: 492 PVIIGAPDLP 521
           P +   P  P
Sbjct: 674 PEVPSVPQPP 683


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 452 LRKNNGGISNDYGRNFRTINNDYGIR 375
           L+  +G + ND   NF  ++ ++G+R
Sbjct: 818 LKNYDGDVENDMALNFTVVHEEFGVR 843


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 402 PEVTPVIIADPAIVLPEPVIVAPIEPTPV 488
           P +TP   ADP    P+P+ + P++  PV
Sbjct: 586 PSITP---ADPVPTSPKPLAIEPVKRKPV 611


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +3

Query: 315  PSPVEINPEPVIVDEESEIKPD---PVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPTP 485
            P+P    P P         KP    P +      V PV     A  +P+P + AP    P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAP----P 1132

Query: 486  VSPVIIGAPDLPNP 527
            V PV  GAP +P P
Sbjct: 1133 V-PVPSGAPPVPKP 1145



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 414  PVIIADPAIVLPEPVIVAPIEPTPVSPVIIGAPDLPNP 527
            PV +   A  +P+P + AP  P P      GAP +P P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAP-----SGAPPVPKP 1164



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 218  PRSSFPSRHWSHRPRPGFSPSSDYC*CKPSINSLSRRNKSRA 343
            PRSS PS H +  P P    SS      P+  S+S R+KS+A
Sbjct: 1252 PRSSVPSPHSNASPSP---TSSSMASAAPARTSVS-RSKSKA 1289


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = -2

Query: 487 TGVGSIGATITGSGR-TMAGS 428
           TGVGSIG++ T  GR ++AGS
Sbjct: 483 TGVGSIGSSATRRGRKSIAGS 503


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 438 IVLPEPVIVAPIEPTPVSPVIIGAPDLPN 524
           +V P P  +    P+P +  I GAP +PN
Sbjct: 288 LVPPPPPGMVMASPSPAAATIPGAPVMPN 316


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 167 NHQRIRANRQRTRYRRLPRSSFPSRH 244
           NH+R        ++ + P SS PSRH
Sbjct: 594 NHERSPNGNNNLKFSKDPNSSSPSRH 619


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 285 SELGEKPGRGRWDQ 244
           +E+ +KP R RWDQ
Sbjct: 208 TEISQKPKRSRWDQ 221


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 300 NQALTPSPVEINPEPVIVDEESEIKPD 380
           +Q+L  +  E+N E    D ESE+ PD
Sbjct: 219 SQSLVGNNCEVNSEDEFSDLESEVDPD 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,301
Number of Sequences: 5004
Number of extensions: 40148
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)