Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d09f
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12) 40 0.002
SB_39126| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 36 0.027
SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08) 35 0.062
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21) 34 0.11
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_18101| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 33 0.25
SB_15263| Best HMM Match : Jun (HMM E-Value=1.8) 32 0.33
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015) 31 0.76
SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 31 1.0
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 31 1.0
SB_44592| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_28466| Best HMM Match : Drf_FH1 (HMM E-Value=2.1) 30 1.3
SB_27315| Best HMM Match : Drf_FH1 (HMM E-Value=2.1) 30 1.3
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22) 30 1.3
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 1.3
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 29 2.3
SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.1
SB_6983| Best HMM Match : rve (HMM E-Value=0.011) 29 3.1
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_32409| Best HMM Match : Oxidored_q2 (HMM E-Value=0.081) 28 5.4
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 28 5.4
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 7.1
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 28 7.1
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 28 7.1
SB_33933| Best HMM Match : T-box (HMM E-Value=0) 28 7.1
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032) 28 7.1
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2) 28 7.1
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 27 9.4
SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0) 27 9.4
>SB_34754| Best HMM Match : TSP_1 (HMM E-Value=7.4e-12)
Length = 439
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 333 NPEPVIVDEESEIKPDPVIVVDGP-EVTPVIIADPAIVLPEPVIV-APIEPTPVSPVIIG 506
NP V+ ++ P P +V + P V P ++ D +P PV+ AP P PV+
Sbjct: 52 NPPSVVEVTTTQAPPPPPVVTEAPTTVPPPVVTDAPTTVPPPVVTDAPTTVPP--PVVTD 109
Query: 507 APDLPNPQ*VLDNMTT 554
AP P V D TT
Sbjct: 110 APTTVPPPVVTDAPTT 125
Score = 36.3 bits (80), Expect = 0.020
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = +3
Query: 315 PSPVEIN-----PEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIV-APIE 476
PS VE+ P P +V E P PV+ V P ++ D +P PV+ AP
Sbjct: 54 PSVVEVTTTQAPPPPPVVTEAPTTVPPPVVTDAPTTVPPPVVTDAPTTVPPPVVTDAPTT 113
Query: 477 PTPVSPVIIGAPDLPNP 527
P PV+ AP P
Sbjct: 114 VPP--PVVTDAPTTVPP 128
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 309 LTPSPVEINPEPVIVDEESEIKPDPVIVVDGPE-VTPVIIADPAIVLPEPVIVAPIEPTP 485
+T +P + P PV+ D + + P +V D P V P ++ D +P P V P EP
Sbjct: 83 VTDAPTTV-PPPVVTDAPTTVPPP--VVTDAPTTVPPPVVTDAPTTVPPP--VQPTEPPS 137
Query: 486 VSPVIIG 506
P IG
Sbjct: 138 TRPPPIG 144
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/71 (30%), Positives = 27/71 (38%)
Frame = +3
Query: 342 PVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPTPVSPVIIGAPDLP 521
PV+ + + P P P PV DP P V V + P PV+ AP
Sbjct: 22 PVLTEAATTQPPAPP---PEPTQAPVADTDPPTNPPSVVEVTTTQAPPPPPVVTEAPTTV 78
Query: 522 NPQ*VLDNMTT 554
P V D TT
Sbjct: 79 PPPVVTDAPTT 89
>SB_39126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 36.7 bits (81), Expect = 0.015
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Frame = +3
Query: 309 LTPSPVEINPEPVIVDEES-EIKPDPVIVVDGPEVTPVII-ADPAI--VLPEPVIVAPIE 476
L P P EI+P P VD S EI P P P++ P++ DP + + P P + PI+
Sbjct: 13 LEPIPPEIDPIPPEVDTISPEIDPIP------PDINPILPEVDPILPEIDPIPPDITPID 66
Query: 477 PTP--VSPV-IIGAPDLPNPQ*VLDNM 548
PTP P+ + P PN + + D++
Sbjct: 67 PTPPCADPIPAVADPIPPNMEPIPDSI 93
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 35.9 bits (79), Expect = 0.027
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Frame = +3
Query: 270 SPLVQIIVNVNQALTPSPVEINP---EPVIVDEESEIKP---------DPVIVVDGPEVT 413
+P V+ IVNV+ V+++ EP++ + I+P +P + VDGP V
Sbjct: 4077 APTVEPIVNVDAPTIEPIVKVDAPAVEPIVTVDVPTIEPTTSVDAPSNEPTVGVDGPTVE 4136
Query: 414 PVIIADPAIVLPEPVIVAP-IEPT 482
P++ D + P + AP +EPT
Sbjct: 4137 PIVSVDALTIEPIVKVDAPAVEPT 4160
Score = 31.5 bits (68), Expect = 0.57
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 270 SPLVQIIVNVNQALTPSPVEINP---EPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAI 440
+P V+ IV V+ V ++ EP++ + I +P++ VD P V P++ D
Sbjct: 4055 APTVEQIVIVDAHTIEPIVRVDAPTVEPIVNVDAPTI--EPIVKVDAPAVEPIVTVDVPT 4112
Query: 441 VLPEPVIVAPI-EPT 482
+ P + AP EPT
Sbjct: 4113 IEPTTSVDAPSNEPT 4127
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 273 PLVQIIVNVNQALTPSPVEINP---EPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIV 443
P ++ I V+ V ++ EP++ + + + +P+I V P + P++ D V
Sbjct: 2925 PTIESIFRVDTPAVKPIVSVDAPTIEPIVRVDATTV--EPIISVHAPTIEPIVRVDAPTV 2982
Query: 444 LPEPVIVAP-IEP 479
P + AP IEP
Sbjct: 2983 KPSVSVDAPTIEP 2995
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 270 SPLVQIIVNVNQALTPSPVEINP---EPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAI 440
+P ++ IV V+ V ++ EP++ + +P++ VD + P++ D
Sbjct: 2968 APTIEPIVRVDAPTVKPSVSVDAPTIEPIV--RVDALTVEPIVSVDAHTIEPIVRVDGPA 3025
Query: 441 VLPEPVIVAPI-EPT 482
V P + AP EPT
Sbjct: 3026 VEPIVSVDAPSNEPT 3040
>SB_58489| Best HMM Match : Ank (HMM E-Value=4.7e-08)
Length = 1188
Score = 34.7 bits (76), Expect = 0.062
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Frame = +3
Query: 153 DVEPAIINEFEPIDNGPAIVDFXXXXXXXXXXXXXXXQASPLVQIIVNVNQALTPSPV-E 329
+VEP + + EP+ PA+++ P++ V + PV
Sbjct: 513 NVEPVLASNVEPVLVSPALLNQCSSAMSNQCSASLASIVEPVLASNVEPVLSSNVEPVLS 572
Query: 330 INPEPVIVDEESEIKPDPVIVVDGPEVTPVI--IADPAIV-LPEPVIVAPIEP 479
N EPV+V + V V V PV+ I +P + + EPV+ + +EP
Sbjct: 573 SNVEPVLVSSVEPVLASNVEPVLASIVEPVLASIVEPVLASIVEPVLASIVEP 625
>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
Length = 631
Score = 33.9 bits (74), Expect = 0.11
Identities = 25/71 (35%), Positives = 28/71 (39%)
Frame = +3
Query: 315 PSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPTPVSP 494
PSP P P E + P P V PE P P PEPV AP P P +
Sbjct: 143 PSP----PNPTEAPEPETVPPQPETVPPQPETVP---PQPGSEEPEPVSQAPEPPKPKT- 194
Query: 495 VIIGAPDLPNP 527
AP+ P P
Sbjct: 195 ---SAPEPPKP 202
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = +3
Query: 273 PLVQIIVNVNQALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPV--IIADPAIVL 446
P++ N+ + P P+ P P + + P P+I GP P +I P +
Sbjct: 349 PVIVPPPNLLFSFPPPPIIPIPPPAMPAMFNPHVPPPMI---GPVTVPPPPLIPPPQASI 405
Query: 447 PEPVIVAPIEPTPVSPVIIGAPDLPN 524
P P ++ + P V P IG P+ P+
Sbjct: 406 PPPTMIQTLPPPSVPPPPIGVPNRPS 431
>SB_18101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +3
Query: 279 VQIIVNVNQALTPSPVEINPEPVIVDEESEIKPD-PVIVVDGPEV---TPVIIAD-PAIV 443
+++I + + + SP I+ P ++D+ E+ D P ++ D PEV +P +I D P ++
Sbjct: 10 LEVIDDSPEVIDDSPEVIDGSPEVIDDSPEVIDDSPEVIDDSPEVIDDSPEVIDDSPEVI 69
Query: 444 LPEPVIV 464
P ++
Sbjct: 70 DDSPEVI 76
Score = 30.3 bits (65), Expect = 1.3
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Frame = +3
Query: 144 EPIDVEPAIINEF-EPIDNGPAIVDFXXXXXXXXXXXXXXXQASPLVQIIVNVNQALTPS 320
E ID P +I++ E ID P ++D SP ++I + + + S
Sbjct: 11 EVIDDSPEVIDDSPEVIDGSPEVID----------DSPEVIDDSP--EVIDDSPEVIDDS 58
Query: 321 PVEINPEPVIVDEESEIKPD-PVIVVDGPEV---TPVIIADPAIVLPE 452
P I+ P ++D+ E+ D P ++ D EV +P +I D + V+ +
Sbjct: 59 PEVIDDSPEVIDDSPEVIDDSPKVIDDSREVFDDSPEVIDDSSEVIDD 106
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 162 PAIINE-FEPIDNGPAIVDFXXXXXXXXXXXXXXXQASPLVQIIVNVNQALTPSPVEINP 338
P +I++ E ID+ P ++D SP ++I + + + SP I+
Sbjct: 3 PEVIDDSLEVIDDSPEVID---DSPEVIDGSPEVIDDSP--EVIDDSPEVIDDSPEVIDD 57
Query: 339 EPVIVDEESEIKPD-PVIVVDGPEV 410
P ++D+ E+ D P ++ D P+V
Sbjct: 58 SPEVIDDSPEVIDDSPEVIDDSPKV 82
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Frame = +3
Query: 321 PVEINPEPVIVDEESEIKPDPVIVVDGPEV----TPVIIADPAIVLPEPVIV--APIEPT 482
P+ P P + I P P ++V P V P+++ P IV P +V API
Sbjct: 435 PLVYTPSPDVFANPPVIVPQPAVIVQRPPVVYHQAPLVVHKPPIVYHRPPVVMPAPIYHM 494
Query: 483 PV 488
PV
Sbjct: 495 PV 496
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = +3
Query: 312 TPSP-VEINPEPVIVDEESEI-KPDPVIVVDGPEVT---PVIIADPAIVLPEPVIVAPI 473
TPSP V NP PVIV + + I + PV+ P V P++ P +V+P P+ P+
Sbjct: 439 TPSPDVFANP-PVIVPQPAVIVQRPPVVYHQAPLVVHKPPIVYHRPPVVMPAPIYHMPV 496
Score = 31.9 bits (69), Expect = 0.43
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +3
Query: 321 PVEINPEPVIVDEESEIKPDPVIVVDGPEVT----PVIIADPAIVLPEPVIVAPIEPTPV 488
P+ +P P + + P IV+ P V PV++ PA+V +P +V P V
Sbjct: 1359 PIIYHPPPEVYHRPDVVLHRPDIVIHRPSVVLHQAPVVVHRPAVVYHQPPVVVHQPPPLV 1418
Query: 489 SPVIIGAPD 515
II + D
Sbjct: 1419 HQPIIHSHD 1427
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 264 QASPLVQIIVNVNQALTPSPVEINPEP-VIVDEESEIKPDPVIVVDGPEVTPVIIADPAI 440
+AS I+VN + P E+ P ++V + P I+ P PVI+ PA+
Sbjct: 1508 KASKKNDIVVNRPPIIYHPPPEVYHRPDIVVHRAPIVLHRPPIIYHQP---PVIVHRPAV 1564
Query: 441 VLPEPVIVAPIEPTPVSPVIIGAPD 515
V +P IV P V ++ + D
Sbjct: 1565 VYHQPPIVFHQPPPAVHQPVLHSHD 1589
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 285 IIVNVNQALTPSPVEINPEPVIVDEESEIKPD-PVIVVDGPEVTPVIIADPAIVLPEPVI 461
++VN + P E+ P IV + I P IV P PV++ PA+V +P I
Sbjct: 19 VVVNRPPIIYHPPPEVYHRPEIVVHRAPILIHRPPIVYHQP---PVVVHRPAVVYHQPPI 75
Query: 462 VAPIEPTPVSPVIIGAPD 515
V P V+ ++ + D
Sbjct: 76 VFHQPPPAVNQPMLYSHD 93
>SB_15263| Best HMM Match : Jun (HMM E-Value=1.8)
Length = 315
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = +3
Query: 321 PVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIA--DPAIVLPEPVIVAPIEPTPVSP 494
P P P+ + +P P+ +D P P I DP P P+ P P P
Sbjct: 176 PPRTQPPPIPPIDPPRTQPPPIPPIDPPRTQPPPIPPIDPPRTQPPPIFPQPTTPAPTKC 235
Query: 495 VIIGAPD 515
+I +
Sbjct: 236 QVINTKE 242
Score = 31.9 bits (69), Expect = 0.43
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +3
Query: 321 PVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVII--ADPAIVLPEPVIVAPIEPTPVS- 491
P P P+ + +P P+ +D P P I DP P P + PI+P
Sbjct: 163 PPRTQPPPIFPIDPPRTQPPPIPPIDPPRTQPPPIPPIDPPRTQPPP--IPPIDPPRTQP 220
Query: 492 PVIIGAPDLPNP 527
P I P P P
Sbjct: 221 PPIFPQPTTPAP 232
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 31.9 bits (69), Expect = 0.43
Identities = 23/79 (29%), Positives = 36/79 (45%)
Frame = +3
Query: 291 VNVNQALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIVAP 470
V++ ++ TP+P +P P KP PV + + I+ P P PV+
Sbjct: 934 VDIMRSPTPTPPP-SPPPKEPTPPPSSKPSPVKEIKPKKPIEKFISRPKPPTPPPVVSPH 992
Query: 471 IEPTPVSPVIIGAPDLPNP 527
+ P+SPV GA +L P
Sbjct: 993 KQTRPISPV--GASNLYKP 1009
>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1268
Score = 31.9 bits (69), Expect = 0.43
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Frame = +3
Query: 315 PSPVEI-NPEPVIVDEESEIKPDPVIV------VDGPEVTPVIIADPAIVLPEPVIVAPI 473
P P+++ +P PV + + PDP+ V +D P TPV I +P+P V +
Sbjct: 391 PGPIDMPDPTPVPKVQTTIDMPDPIPVPKVQTTIDMPGPTPVPKVQTTIDMPDPTPVPKV 450
Query: 474 EPTPVSPVIIGAPDLPNPQ*VLDNMTTDIV 563
+ T P G +P Q +D T+ ++
Sbjct: 451 QTTIDMP---GPTPVPKVQTTIDISTSTLL 477
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 315 PSPVEINPEPVIVDEESEIK-PDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPTPVS 491
P P+ + +D I P VD P TPV I +P P+ V ++ T
Sbjct: 331 PDPIPVPKVQTNIDMPDPIPVPKVQTTVDMPGPTPVPKVQTTIDMPGPIPVPKVQTTIDM 390
Query: 492 PVIIGAPDLPNP 527
P I PD P P
Sbjct: 391 PGPIDMPD-PTP 401
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Frame = +3
Query: 315 PSPVEINPEPVIVDEESEIK-PDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIE----- 476
P P+ + +D I P +D P TPV I +P+P+ V ++
Sbjct: 286 PDPIPVPKVQTTIDMPDPIPVPKVQATIDMPGPTPVPKVQTTIDMPDPIPVPKVQTNIDM 345
Query: 477 PTPVS-PVIIGAPDLPNPQ*VLDNMTT 554
P P+ P + D+P P V TT
Sbjct: 346 PDPIPVPKVQTTVDMPGPTPVPKVQTT 372
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = +3
Query: 315 PSPVEINPEPVIVDEESEIK-PDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPTPVS 491
P P+ + +D I P +D P TPV I +P+P+ V ++ T
Sbjct: 226 PGPIPVPKVQTTIDMPGPIPVPKVQTNIDMPGPTPVPKVQATIDMPDPIPVPKVQTTIDM 285
Query: 492 PVIIGAP------DLPNP 527
P I P D+P+P
Sbjct: 286 PDPIPVPKVQTTIDMPDP 303
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +3
Query: 273 PLVQIIVNVNQALTPSPVEINPEPVIVDEESEIK-PDPVIVVDGPEVTPVIIADPAIVLP 449
P+ ++ N++ P P+ + VD P +D P PV I +P
Sbjct: 335 PVPKVQTNIDM---PDPIPVPKVQTTVDMPGPTPVPKVQTTIDMPGPIPVPKVQTTIDMP 391
Query: 450 EPVIVAPIEPTPVSPVIIGAPDLPNP 527
P+ + +PTPV P + D+P+P
Sbjct: 392 GPIDMP--DPTPV-PKVQTTIDMPDP 414
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 288 IVNVNQALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIVA 467
I + + L P E + EP+ V ESE + + P++ P PA + P + +
Sbjct: 415 IEEIRKRLVDMPAEDDNEPMQVSRESEREEEDSSDGFKPKLQPTFQPAPAHIETAPKVRS 474
Query: 468 PI-EPTPVSPV 497
P + TPV PV
Sbjct: 475 PSPDLTPVQPV 485
>SB_25393| Best HMM Match : Collagen (HMM E-Value=0.00015)
Length = 391
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 309 LTPSPVEINPEPVIVDEESEIKPDPVIVVDGP---EVTPVIIADPAIVLPEPVIVAPIEP 479
+ P PV+I P PV +I+P PV + P + PV I P + + +P + I+P
Sbjct: 290 IQPPPVDIQPPPV------DIQPPPVDIQQPPVDIQPPPVDIQPPPVDIQQPPV--DIQP 341
Query: 480 TPV 488
PV
Sbjct: 342 PPV 344
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +3
Query: 309 LTPSPVEINPEPVIVDEES-EIKPDPVIVVDGP---EVTPVIIADPAIVLPEP 455
+ P PV+I P PV + + +I+P PV + P + PV I P + + +P
Sbjct: 297 IQPPPVDIQPPPVDIQQPPVDIQPPPVDIQPPPVDIQQPPVDIQPPPVDIQQP 349
>SB_49841| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 1841
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 324 VEINPEPVI--VDEESEIKPDPVIVVDGPEVTPVIIADPAIVLP-EPV-IVAPIEPTPVS 491
V + P PV+ + + +P+ VV V PV+ +P V+P PV +V +EP PV
Sbjct: 1757 VGMEPNPVVPYAPVQPMVGMEPLPVVPYAPVQPVVGMEPRTVVPYAPVQLVVGMEPRPVV 1816
Query: 492 P 494
P
Sbjct: 1817 P 1817
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 321 PVEINPEPVIVDEESEIKPDPVIVVDGPEVT----PVIIADPAIVLPEPVIVAPIEPTPV 488
P+ +P P I + P +V+ P + PVI+ PA+V +P I+ P V
Sbjct: 148 PIIYHPPPEIYHRPDIVVHRPPLVIHRPPIIYHQPPVIVHRPAVVYHQPPIIFHQPPPAV 207
Query: 489 SPVIIGAPD 515
S ++ + D
Sbjct: 208 SQPLLFSHD 216
>SB_44592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 282 QIIVNVNQALTPSPVEINPEPVIVDEESEIKPD-PVIVVDGPEV---TPVIIAD 431
++I + + + SP I+ P ++D+ E+ D P ++ D PEV +P +I D
Sbjct: 78 EVIDDSPEVIDDSPEVIDDSPEVIDDSPEVIDDSPEVIDDSPEVIDDSPKVIDD 131
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 135 ILHEPIDVEPAIINEFEPIDNGPAIVDFXXXXXXXXXXXXXXXQASPLVQIIVNVNQALT 314
I+H +D + E ID+ P ++D SP ++I + + +
Sbjct: 62 IIHSFLDSPEVTYDSPEVIDDSPEVID---DSPEVIDDSPEVIDDSP--EVIDDSPEVID 116
Query: 315 PSPVEINPEPVIVDEESEIKPD-PVIVVDGPEV 410
SP I+ P ++D+ E+ D P ++ D EV
Sbjct: 117 DSPEVIDDSPKVIDDSREVFDDSPEVIDDSSEV 149
>SB_5243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +3
Query: 267 ASPLVQIIVNVNQALTPSPVEINPEPVIVDEE----SEIKPDPVIVVDGPEVTPVIIADP 434
A P V++I + A P P P P I ++ S + P D P+ P++ A P
Sbjct: 817 APPFVKLIASAMAAAFPFPFNPAPAPPITPDDTITRSAVHNLPPCPPDPPQRLPLVEACP 876
Query: 435 AIVLPEPVIVAPIEPTP 485
+P I P P P
Sbjct: 877 GSPSVKPAIDWPPPPPP 893
>SB_28466| Best HMM Match : Drf_FH1 (HMM E-Value=2.1)
Length = 331
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 291 VNVNQALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVT--PVIIADPAIVLPEPVIV 464
V+ A P E++ +PV E SE+ PV V+ EV+ P +P V +P V
Sbjct: 35 VSAKPACNVEPGEVSAKPVGDVEPSEVFAKPVGDVEPGEVSAKPAGDVEPGEVSAKP--V 92
Query: 465 APIEPTPVSPVIIG 506
+EP+ VS + G
Sbjct: 93 GDVEPSEVSAKLAG 106
>SB_27315| Best HMM Match : Drf_FH1 (HMM E-Value=2.1)
Length = 300
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 291 VNVNQALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVT--PVIIADPAIVLPEPVIV 464
V+ A P E++ +PV E SE+ PV V+ EV+ P +P V +P V
Sbjct: 73 VSAKPACNVEPGEVSAKPVGDVEPSEVFAKPVGDVEPGEVSAKPAGDVEPGEVSAKP--V 130
Query: 465 APIEPTPVSPVIIG 506
+EP+ VS + G
Sbjct: 131 GDVEPSEVSAKLAG 144
>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
Length = 1197
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 309 LTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPTPV 488
L P + EP+ ++ +S P+P V+ + + P P ++P P P+
Sbjct: 802 LDPDSTKKPTEPIYINRKSLSSPEPESAVELSRPDSLTMEAPTTKTDRP--LSPSAPPPL 859
Query: 489 SPVIIGAP 512
P +GAP
Sbjct: 860 PPRPVGAP 867
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = +3
Query: 270 SPLVQIIVNVNQALTPSPVEI-NPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVL 446
+P Q + L P+ VE P P++ + P P + P P P
Sbjct: 75 APTPQTQASTAPPLVPAGVEAPTPTPMVAQSVAPTPPPPPRAPETPSQAPSPPPPPT--- 131
Query: 447 PEPVIVAPIEPTPVSPVIIGAPDLP 521
P AP P P++P G P P
Sbjct: 132 -SPATRAPPPPPPIAPATGGPPPPP 155
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/80 (28%), Positives = 31/80 (38%)
Frame = +2
Query: 23 SRSKDEIPDHCRYHSRHGFRRACQPRPGDAWLGRPCSHPTRAYRRRTCNHQRIRANRQRT 202
SR + R SR +R + L R +R+Y R + + R R +R RT
Sbjct: 155 SRPRSRYRGRSRSRSRDRYRERRPRKSRSKSLDRSRRSRSRSYSRPSPSPYRSRRSRSRT 214
Query: 203 RYRRLPRSSFPSRHWSHRPR 262
R R SR RPR
Sbjct: 215 RRSRSRSRRSRSRSRDRRPR 234
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 429 DPAIVLPEPVIVAPIEPTPVSP 494
+PA + P P+ PI PTP++P
Sbjct: 200 NPAAINPTPINPTPINPTPINP 221
>SB_51905| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 928
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 309 LTPSPVEINPEPVIVDEESEIKPDPVIV--VDGPEVTPVIIADPAIVLPEPVIVAPIEPT 482
L S + I EP+ +E S P+P ++ ++ + ++ P I + + + PI+
Sbjct: 38 LADSILNIKAEPIDAEESSGCMPNPSLIANINKESIEDELLDTPTINIKQEPLEEPIDEC 97
Query: 483 PV 488
PV
Sbjct: 98 PV 99
>SB_6983| Best HMM Match : rve (HMM E-Value=0.011)
Length = 251
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 381 PVIVVDGPEVTPVIIADPAIVLPEPVIVAPIE-PTP 485
P VVD PE V+ P +V+P P+ +E PTP
Sbjct: 198 PPQVVDIPETPAVVPPIPTLVVPSPLTQPEVESPTP 233
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = -1
Query: 440 NGGISNDYGRNFRTINNDYGIRFDFAFLINDHWLGIYFDGRGS*CLVYINNNLN*GRSLA 261
N ISND N NN+ ++ IN++ Y G + NN N G S
Sbjct: 339 NDDISNDGNLNGGGANNNNNKNNNYNSGINNNNNNNYNSGSSNGRNTNNGNNNNAGTSNV 398
Query: 260 GGDG-TNDDWGRRNGEVDDSGS 198
G +G TN+ NG ++ G+
Sbjct: 399 GNNGFTNNGVNNNNGNSNNGGN 420
>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +3
Query: 315 PSPVEINPEPVIVDEESE-IKPD----PVIVVDGPEVTP 416
P P + P PV+V EE E +P P V DG E TP
Sbjct: 229 PPPPRVVPLPVVVQEEQEQPRPRKSVLPARVADGTEATP 267
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 405 EVTPVIIADPAIVLPEPVIVAPIEPTPVSPVIIGAPDL 518
E TPV+ P V PEP P P P SP + P L
Sbjct: 530 ETTPVLPL-PEKVTPEPGSTTPPSPPPDSPKSVAPPAL 566
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +3
Query: 312 TPSPVEINPEPVIVDEESEIK----PDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEP 479
TP VE P P+ V +I+ P P V P++ P+ P V P+I P
Sbjct: 450 TPPRVEHVPFPIPVHSPPQIEKVPIPFPYPVPSPPQIKPMPYPVPVPVRQPPMIQRFYYP 509
Query: 480 TPVS 491
PVS
Sbjct: 510 VPVS 513
>SB_32409| Best HMM Match : Oxidored_q2 (HMM E-Value=0.081)
Length = 185
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 275 GRSLAGGDGTNDDWGRRNGEVDDSGSVVD 189
G GGDG +DD G +G+ DD G V D
Sbjct: 137 GSDGGGGDGEDDDGG--DGDDDDGGDVED 163
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 273 PLVQIIVNVNQALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPA--IVL 446
P + V+VN P+ I P S IKP V P I+ P+ +V
Sbjct: 89 PSKNLKVSVNPNNLSLPINITHVPNGTAGISVIKPVT-------RVQPQILRGPSQSVVN 141
Query: 447 PEPVIVAPIEPTPV 488
P P++ AP+EP+ V
Sbjct: 142 PSPIVSAPVEPSSV 155
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +3
Query: 402 PEVTPVIIADPAIVLPEPVIVAPIEPTPVSPVIIGAPDLPNPQ*VLDNMTTD 557
PE P +ADP +L + V V P EP P V AP Q + NM D
Sbjct: 563 PEEDP--LADPIAMLTDEVQVPPAEPHPAPAVNHQAPG----QATIQNMVAD 608
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/75 (21%), Positives = 27/75 (36%)
Frame = +3
Query: 303 QALTPSPVEINPEPVIVDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPT 482
Q + PS P S + P P + PV+ P++ + P++
Sbjct: 322 QMVAPSSTVTPPVTEPAPPSSVVAPPPAVPTPATAPPPVVAPPPSVFASSSGVPTPVKAP 381
Query: 483 PVSPVIIGAPDLPNP 527
P S V + +P P
Sbjct: 382 PPS-VFASSSGVPTP 395
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +3
Query: 378 DPVIVVDGPEVTPVIIADPAIVLPEPVIVAPIEPTPV 488
+P+++++ P+ + +I P+ V P+ PTPV
Sbjct: 1098 EPILLLEEPDSSAAVITQQDTGQPKQSEVEPVSPTPV 1134
>SB_33933| Best HMM Match : T-box (HMM E-Value=0)
Length = 402
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 119 GRPCSHPTRAYRRRTCNHQRIRANRQRTRYR 211
G C+ + Y RR CN ++ R+ RY+
Sbjct: 349 GTDCASREKRYERRRCNQNKMAVARECARYQ 379
>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
Length = 2565
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 143 RAYRRRTCNHQRIRANRQRTRYRRLPRSSFPSRHWSHRPR 262
R RRR +R R R+R R R+ R R + HR R
Sbjct: 1470 RRIRRRRRRKRRRRRRRRRRRRRQQKRQRRKQRRYQHRRR 1509
>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
Length = 356
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 285 IIVNVNQALTPSPVEINPEPVIVDEESEIKPD-PVIVVDGPEVTPVIIADPAIVLPEPVI 461
I+++ + P E+ P IV + I P I+ P PV++ PAI+ +P I
Sbjct: 150 IVIHRPPIIYHPPPEVYHRPDIVVHRAPIMLHRPAIIYHQP---PVVVHRPAIIYHQPPI 206
Query: 462 VAPIEPTPVSPVIIGAPD 515
V P V+ I+ + D
Sbjct: 207 VFHQPPPVVNQPILHSHD 224
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Frame = +3
Query: 339 EPVIVDEESEIKPDP----VIVVDGPEVTPVIIADPAI 440
+P+I+D E E+KP P V+ D P P I+D ++
Sbjct: 1117 KPIILDPEMELKPLPGKPLVLPSDDPSQPPSYISDTSL 1154
>SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0)
Length = 374
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +3
Query: 351 VDEESEIKPDPVIVVDGPEVTPVII-ADPAIVLPEPVIVAPIEPTPVSPVIIGAPD 515
+DEE + + I+ E I A PA EP P+EPTP P PD
Sbjct: 301 LDEELRLSMEKEIMARAAEQKKKIEEATPAPPPEEPKQETPVEPTPEVPAETPKPD 356
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,894,559
Number of Sequences: 59808
Number of extensions: 364030
Number of successful extensions: 1513
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1463
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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