Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11d08r
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32400.2 68414.m03998 senescence-associated family protein co...    34   0.080
At1g32400.1 68414.m03997 senescence-associated family protein co...    34   0.080
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le...    30   1.3  
At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   3.0  
At4g35070.1 68417.m04978 expressed protein                             29   4.0  
At3g04290.1 68416.m00454 GDSL-motif lipase/hydrolase family prot...    28   5.2  
At1g28695.1 68414.m03534 expressed protein ; expression supporte...    28   6.9  
At3g02890.1 68416.m00284 PHD finger protein-related contains low...    27   9.2  
At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family pr...    27   9.2  

>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 550 VGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVF 413
           +G   FVI+  GC G    S C L  Y++ +++L+ ++L     +F
Sbjct: 88  IGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIF 133


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 550 VGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVF 413
           +G   FVI+  GC G    S C L  Y++ +++L+ ++L     +F
Sbjct: 88  IGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFAAFIF 133


>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
           leucine zipper-containing protein - Lycopersicon
           esculentum, EMBL:Z12127 contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 653

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 416 HHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEERNNE 535
           HH+A    + H H+ ED    +H+  L   T  S+  ++E
Sbjct: 7   HHHANESSENHDHKSEDHENKQHSDELHSSTPESQSESSE 46


>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 380 RDSSNYSV--EIHKHHYAQGQFQCHQHQHEDR 469
           RD++N +   E H HH+ Q Q Q HQHQH+ +
Sbjct: 277 RDTNNTATAEEGHYHHHQQQQQQ-HQHQHQQQ 307


>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 380 RDSSNYSV--EIHKHHYAQGQFQCHQHQHEDR 469
           RD++N +   E H HH+ Q Q Q HQHQH+ +
Sbjct: 277 RDTNNTATAEEGHYHHHQQQQQQ-HQHQHQQQ 307


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 350 VLLEGL-VHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDR 469
           +L +GL ++P     N+ +  H HH  Q Q   H H H+ +
Sbjct: 129 LLRQGLPLYPPDIIPNHQLHPHPHHQQQQQHNHHHHHHQQQ 169


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 104 EAQSEDDGHQFNGGDHDGDRADSNAIVIEECLQDFGAAGV 223
           EA+ ED+G  F GG+ DG+   +  + +  C  + G+ GV
Sbjct: 187 EAEVEDEG-SFCGGEGDGNSLPAKKMKMSSCCCNCGSNGV 225


>At3g04290.1 68416.m00454 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile: lipase/acylhydrolase
           with GDSL-like motif
          Length = 366

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 436 LTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFHVIEHRFSCCGPTGPGSYLSLTLPIT 260
           L   V   +  D  VAA    MN  +  + + F  +  + +CCG  GP + + L  P++
Sbjct: 256 LIASVNAEIGQDVFVAANAYQMNMDYLSNPEQFGFVTSKVACCG-QGPYNGIGLCTPVS 313


>At1g28695.1 68414.m03534 expressed protein ; expression supported
           by MPSS
          Length = 329

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 320 IQLLWSNGSGLVPILDPAHNVLLDDPLYGNQRVRRLH 210
           ++  W  G G +P+LD    V +D   Y   R +RLH
Sbjct: 84  LESFWE-GEGTLPLLDHLMVVAVDQTAYDRCRFKRLH 119


>At3g02890.1 68416.m00284 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 963

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 410 HKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEERNNECDASNNHTGHR 568
           HK   +     C+ HQ    +G +  V    G   +EE+ N    S+ H+G R
Sbjct: 114 HKDQDSMKVDSCNDHQARSTLG-QGKVKEKSGAKNNEEKKNTLTGSSKHSGPR 165


>At1g27740.1 68414.m03390 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 258

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +2

Query: 446 HQHQHEDRV--GDKHAVALPD 502
           HQHQH + V   D HA  LPD
Sbjct: 45  HQHQHHNNVLSSDHHAFLLPD 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,043
Number of Sequences: 28952
Number of extensions: 284120
Number of successful extensions: 903
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)