Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d08f
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 31 0.17
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 1.6
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 27 1.6
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 26 4.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 6.5
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 25 6.5
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi... 25 6.5
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 8.6
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 8.6
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 8.6
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 8.6
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 8.6
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -2
Query: 427 IAAT-TPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPK-NAITNAMPPTII 254
+A T TP+ + SFS+ +T VTS + S++ P N+ T +PPT
Sbjct: 30 VATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTS 89
Query: 253 QATGATL 233
T T+
Sbjct: 90 MNTTTTV 96
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = -2
Query: 472 NVSWSCWKVLFIQFGIAATTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHP 293
NV+ + + + + T + T+ I P S S +T+ + TSM + + P
Sbjct: 43 NVTTTSFSSASTETSTHSVTSTNITS-IVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTS 101
Query: 292 KNAITNAMPPT 260
N T PPT
Sbjct: 102 LNTTTTTAPPT 112
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 418 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAITNAMPPTIIQATGA 239
TTP T TITP V + I T M A +T M+ + + A T ++ T
Sbjct: 108 TTPMVETTTITPMVETTTI-TPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTT 166
Query: 238 TLKLVSDRTV 209
T +V T+
Sbjct: 167 TTPMVETTTI 176
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 246 VACMIVGGIAFVIAFF 293
+ C+IVGG+A+V+ FF
Sbjct: 449 LGCVIVGGLAYVVMFF 464
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 464 LVLLEGLVHPVRDSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEER 285
++LLE L++ + + +EI HH + H H HED H + D ++
Sbjct: 153 ILLLEVLLNRYVEW-RFGMEIGDHHGPTLGAKQHSHSHEDGAHGVHEHPVYDIEECADGV 211
Query: 284 NNEC 273
+EC
Sbjct: 212 EHEC 215
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 571 QGVVEQHVMGRVKDRYEPGPVGPQQLN 491
Q VV++ V VK+ P P PQ LN
Sbjct: 1165 QNVVDESVTRVVKELPVPAPAAPQTLN 1191
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -1
Query: 446 LVHPVRDSSNYSVEIHKH-HYAQ 381
LVH V ++ YSV + +H HY Q
Sbjct: 287 LVHLVHETLQYSVRLEQHFHYTQ 309
>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 356 QHEDRVGDKHAVALPDGTAASEERNNECDASNNHTGHRRYPE 231
+H+ V KH ALPD N+ ++ ++ + + PE
Sbjct: 50 EHQKFVLKKHLEALPDALVRLRNATNDLESISSDSAYEGTPE 91
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +3
Query: 441 NKTFQQDQDTFHVIEHRFSCCGPTGPGSYLSLTLPITC 554
N F DQD +VI FS P+ G + TC
Sbjct: 191 NPLFFGDQDNGYVISQSFSLRDPSARGGLRRYAIIATC 228
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 440 HPVRDSSNYSVEIHKHHYAQGQFQ 369
HP +DS Y+ +H +A +FQ
Sbjct: 511 HPNKDSEVYTKNLHNKRFASVRFQ 534
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 8.6
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +2
Query: 362 DGTETDLGRNGVCESRRSSCCY 427
DG L + +C+ ++ +CCY
Sbjct: 342 DGKTCKLTKGSLCDDQQDACCY 363
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 354 LVLMALKLTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFH 476
+V+++L +++GVM + +V I +W F + +T H
Sbjct: 1106 VVIISLGISIGVMFLIMSGSIVVEIIHWF---FSEHVETLH 1143
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 332 CHLRDLHAGVDGTETDLGRNGV 397
C LRD DG +T++G G+
Sbjct: 683 CLLRDFEILADGDQTEVGEKGI 704
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 428 DSSNYSVEIHKHHYAQGQFQCHQHQHE 348
D+ + ++E +Y +G+F CH HE
Sbjct: 286 DTCSQNLEHVGFYYREGKFYCHLDYHE 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,289
Number of Sequences: 5004
Number of extensions: 50493
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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