Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11d08f
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 64 6e-11
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 53 2e-07
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 49 2e-06
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 48 4e-06
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 48 7e-06
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 44 6e-05
Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein. 42 3e-04
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 42 3e-04
Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical pr... 35 0.039
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 35 0.039
AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical ... 35 0.039
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 32 0.28
AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin f... 32 0.28
AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin f... 32 0.28
Z49127-5|CAA88945.1| 421|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF125952-3|AAD14699.1| 475|Caenorhabditis elegans Hypothetical ... 29 2.6
AC006722-9|ABP57813.1| 475|Caenorhabditis elegans Hypothetical ... 29 2.6
Z82270-1|CAB63203.1| 914|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z68159-4|CAA92285.1| 323|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81463-3|CAB03847.1| 307|Caenorhabditis elegans Hypothetical pr... 27 7.9
U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 7/132 (5%)
Frame = +3
Query: 183 VHLQFADIETVLSETSFRVAPVACMIVGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVL 362
+ L+F ++ +L + P+ +++G + ++ F GCCGAIRE+ C+ V++A+ + +L
Sbjct: 34 LQLKFDNVLDILGDERL-ATPILLLVIGSLCTLLGFLGCCGAIRENYCLTVSFAVLLALL 92
Query: 363 MALKLTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFHV------IEHRFSCCGPTGPGS 524
+ ++ ++ + D I N + + ++ V F CCG T
Sbjct: 93 ITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHESRGVESAWDKTHQLFECCGVTNSSD 152
Query: 525 YLSL-TLPITCC 557
+L+ T+P +CC
Sbjct: 153 WLTFTTIPDSCC 164
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 261 VGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGVVAAIPNWM 440
VG + F++ FFGCCGA ES +L + +++L A++L V N + V++I +
Sbjct: 74 VGALLFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQQVL 133
Query: 441 NKT--FQQDQDTFHVIEHRFSCCGPT 512
K+ + + I++ F CCG T
Sbjct: 134 KKSSATYELRKNIKPIQNVFQCCGAT 159
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Frame = +3
Query: 255 MIVGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGVVAAIP- 431
+++G + V+A GCCG S L+ Y++ + +L+ L+ G+ + DG+ +
Sbjct: 118 IVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSD 177
Query: 432 --NWMNKTFQQD----QDTFHVIEHRFSCCGPTG 515
N+M + + Q Q++ ++ F CCG G
Sbjct: 178 ALNYMVQHYYQGPGVVQESLDHLQTAFRCCGNAG 211
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +3
Query: 279 VIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGVVAAIPNWMNKTFQQ 458
+I F G GA+ S +L Y +FM++L L++ +G+ V V V + ++ +F
Sbjct: 83 IIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTVKEYVFDSFNM 142
Query: 459 D-QDTFHVIEHRFSCCG 506
+ Q R++CCG
Sbjct: 143 NAQADISAFNFRYNCCG 159
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 47.6 bits (108), Expect = 7e-06
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Frame = +3
Query: 255 MIVGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGVVAAIPN 434
+IVG + F+I F GC G++RE+ L Y+ + +L+ + + GV + D + I N
Sbjct: 89 LIVGFLTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRN 148
Query: 435 WMNKT---FQQDQDTFHVI---EHRFSCCGPTG 515
+N ++ D D +I + + CCG G
Sbjct: 149 LLNDVVVGYRDDPDLQLLIDSMQETWMCCGING 181
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = +3
Query: 264 GGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGVVAAIPNWMN 443
G I ++ +FGC GA + + C L + +++ L+L V +F + + + + M
Sbjct: 64 GAIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMY 123
Query: 444 KTFQQD-------QDTFHVIEHRFSCCG 506
T + +D F ++ +F CCG
Sbjct: 124 DTIRNRYSSETAFKDAFDTVQEKFECCG 151
>Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein.
Length = 395
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 255 MIVGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVNLDGVVAAIP 431
+++G + V+A GCCG S L+ Y++ + +L+ L+ G+ + DG P
Sbjct: 229 IVLGAVMMVVAMXGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGETPVAP 287
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +3
Query: 255 MIVGG-IAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVN 404
+ VGG I V+AF GCCGA +E +L Y+ +++++A+++ + F++
Sbjct: 86 LFVGGFIVIVVAFLGCCGAAKEWRPLLCCYSSCLMLILAIQIAATIYAFLH 136
>Z73908-1|CAA98130.2| 230|Caenorhabditis elegans Hypothetical
protein F53B2.2 protein.
Length = 230
Score = 35.1 bits (77), Expect = 0.039
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Frame = +3
Query: 210 TVLSETSFRVAPVACMIVGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGV 389
TV + F V +++GG V+ GC S L + + + ++ +K+ V
Sbjct: 43 TVARTSLFYVYRTISIMIGGCMVVLGLCGCFAVCFGSKTALSVHLVLVFLVFVVKIVAIV 102
Query: 390 MVFVNLD-------GVV--AAIPNWMNKTFQQDQDTFHVIEHRFSCCGPTGPGSYLSL-T 539
M N D GV + N+ N + + ++T + CCG G +L
Sbjct: 103 MFLANKDHLRREFVGVYRDELVANYHNNS--RTKNTLDWVHTSLKCCGANGCEDFLPAGN 160
Query: 540 LPITC-CST 563
P +C C T
Sbjct: 161 FPTSCECGT 169
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 35.1 bits (77), Expect = 0.039
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Frame = +3
Query: 255 MIVGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVM----------VFVN 404
++ G ++ F G CGA+ S +L+ + +F++ + +G + V N
Sbjct: 31 LVCGCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLSLFYKDKVYSVKEN 90
Query: 405 LDGVVAAIPNWMNKTFQQDQDTFHVIEHRF--SCCGPTGPGSYLS 533
+ +V + M + T + + +F CCG GP Y+S
Sbjct: 91 VREIVKSKYGVMTSEPENKMVTEFIDKLQFYEKCCGSLGPTDYIS 135
>AL021487-1|CAA16352.4| 241|Caenorhabditis elegans Hypothetical
protein Y45F10B.1 protein.
Length = 241
Score = 35.1 bits (77), Expect = 0.039
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 11/127 (8%)
Frame = +3
Query: 231 FRVAPVACMIVGGIAFVIAFFGCCGAIRESNCMLVTYAIFMLVLMALKLTLGVMVFVNLD 410
F V +++GG V+ F GC S L + + + ++ +K+ VM N D
Sbjct: 61 FYVYRTISIMIGGCMVVLGFCGCFAVGFGSKTALSVHLVLVFIVFVVKIVAIVMFLANND 120
Query: 411 -------GVV--AAIPNWMNKTFQQDQDTFHVIEHRFSCCGPTGPGSYLSL-TLPITC-C 557
GV + N+ N + + ++T + CCG G +L P +C C
Sbjct: 121 HLRREFVGVYRDELVANYHNNS--RTKNTLDWVHTSLKCCGANGCEDFLPAGNFPTSCEC 178
Query: 558 STTPCTV 578
T V
Sbjct: 179 GTKNAVV 185
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 359 VDGTETDLGRNGVCESRRSSCCYPELDEQDLP 454
+DG+ D+ +G C +R+S+C DE+ +P
Sbjct: 288 IDGSVIDIAHSGACRARKSTCITCPKDEKKIP 319
>AF039043-9|AAB94196.1| 427|Caenorhabditis elegans Tetraspanin
family protein 14,isoform a protein.
Length = 427
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Frame = +3
Query: 258 IVGGIAFVIAFFGCCGAIRESNCMLVTYA--IFMLVLMALKLTLGVMVFVNLDGVVAAIP 431
I G V++FFG GA+R++ +L +A +F+ ++ + +TL D
Sbjct: 78 IFGFSICVVSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSA 137
Query: 432 NWM----NKTFQQDQDTFHV---IEHRFSCCG 506
NW+ K + +++ + ++ CCG
Sbjct: 138 NWLLLYAVKNYHTNRNLAEIMDALQENLECCG 169
>AF039043-8|AAL02514.1| 451|Caenorhabditis elegans Tetraspanin
family protein 14,isoform b protein.
Length = 451
Score = 32.3 bits (70), Expect = 0.28
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Frame = +3
Query: 258 IVGGIAFVIAFFGCCGAIRESNCMLVTYA--IFMLVLMALKLTLGVMVFVNLDGVVAAIP 431
I G V++FFG GA+R++ +L +A +F+ ++ + +TL D
Sbjct: 102 IFGFSICVVSFFGFMGALRDNIFLLKCFAACVFLSYILVVAVTLVFFTLFYTDTTEGLSA 161
Query: 432 NWM----NKTFQQDQDTFHV---IEHRFSCCG 506
NW+ K + +++ + ++ CCG
Sbjct: 162 NWLLLYAVKNYHTNRNLAEIMDALQENLECCG 193
>Z49127-5|CAA88945.1| 421|Caenorhabditis elegans Hypothetical
protein F13D12.5 protein.
Length = 421
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -1
Query: 428 DSSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEERN 282
DS Y+++I H + G F+ + + E+ +G + ++ DG +RN
Sbjct: 96 DSLTYNIKITDLHMSNG-FEKNSGKREENIGSRESIYREDGARGKAKRN 143
>AF125952-3|AAD14699.1| 475|Caenorhabditis elegans Hypothetical
protein C01B4.7 protein.
Length = 475
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 267 GIAFVIAFFGCCGAIRESNCML-VTYAIFMLVLMALKLTLGVMVFVNLDGVVAAIPNWMN 443
G+ ++F G C + L VTY+ +++V + +G+ V + + GV+ + W
Sbjct: 116 GVRLTLSFCGLCSTLGTFFTPLAVTYSFYLVVFCRVLQGIGISVILTVLGVIPSY--WSP 173
Query: 444 KT 449
KT
Sbjct: 174 KT 175
>AC006722-9|ABP57813.1| 475|Caenorhabditis elegans Hypothetical
protein Y19D10A.4 protein.
Length = 475
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 267 GIAFVIAFFGCCGAIRESNCML-VTYAIFMLVLMALKLTLGVMVFVNLDGVVAAIPNWMN 443
G+ ++F G C + L VTY+ +++V + +G+ V + + GV+ + W
Sbjct: 116 GVRLTLSFCGLCSTLGTFFTPLAVTYSFYLVVFCRVLQGIGISVILTVLGVIPSY--WSP 173
Query: 444 KT 449
KT
Sbjct: 174 KT 175
>Z82270-1|CAB63203.1| 914|Caenorhabditis elegans Hypothetical
protein F53H2.1 protein.
Length = 914
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -1
Query: 425 SSNYSVEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGT-AASEERNNECDASNNHTG 249
+SN +VE + H G+ + +++ + + P T A + RN+E NH+G
Sbjct: 456 TSNLNVEPNIWHVTPGKDKNRIDRYQSELDSSKQQSTPTATIAVNIRRNSEQSQVENHSG 515
Query: 248 HRRYPEAG 225
H + + G
Sbjct: 516 HFQNEDYG 523
>Z68159-4|CAA92285.1| 323|Caenorhabditis elegans Hypothetical
protein C33D9.4 protein.
Length = 323
Score = 27.9 bits (59), Expect = 5.9
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +3
Query: 339 YAIFMLVLMALKLT-LGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFHVIEHRFSCCGPTG 515
Y F V+ A+ L+ + +FV V+ W +K D+ F I F C
Sbjct: 17 YFTFSTVIAAIPLSYMPPTIFVMFKIVLTY---WKSKNVSMDRHIFTFISINFFCSLSFF 73
Query: 516 PGSYLSLTLPITCCSTTPCTVI 581
Y +TLP T T+ C +
Sbjct: 74 FSDYFRITLPATGIFTSWCASV 95
>Z81463-3|CAB03847.1| 307|Caenorhabditis elegans Hypothetical
protein C06B8.4 protein.
Length = 307
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 309 IRESNCMLVTYAIFMLVLMALKLTLGVMVFVN 404
I++S+ + Y ML+ LK+ +GV+ F+N
Sbjct: 26 IKKSSSSMANYKYLMLISSFLKVFIGVLHFIN 57
>U13019-7|AAC24445.2| 689|Caenorhabditis elegans Hypothetical
protein T12A2.6 protein.
Length = 689
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 357 VLMALKLTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFHVIEHR 491
VL+ TLG F L + IP MN +++D + + EHR
Sbjct: 210 VLVTCHHTLGPENFGKLGDFLEIIPFQMNGMYRKDSEFLYFYEHR 254
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,363
Number of Sequences: 27780
Number of extensions: 306155
Number of successful extensions: 892
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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